TkA06G172090 | RubberDandelionOmics

Gene overview

TkA06G172090

Reference: TK1151 Chr: Chr06 Coordinates: 45157134-45157853 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

639 bp · TkA06G172090|TK1151|cDNA

CTCTCGTTAGGTTTCGATTCCAATTCTAATTCTAATTCGATAACCAATCGGCCGATTCAAGTTTTGCAATGTTCATCTGGATCCACCGGTTACCTTCACACGATGCAAGAAATCCTCACGGAAATCGCGACGTATTCTCTCGGAAACCTAGATCAGATAAGCTATTACAAGCAGATTTCTACAGATGGAAATAGCAATTTCGATCTGAAAGTACGAGGCGTCGAAGCTAAAAAGAAGCACTTGCTCGCGTTGCTAGAAAT...

CDS

Download CDS FASTA

639 bp · TkA06G172090|TK1151|CDS

CTCTCGTTAGGTTTCGATTCCAATTCTAATTCTAATTCGATAACCAATCGGCCGATTCAAGTTTTGCAATGTTCATCTGGATCCACCGGTTACCTTCACACGATGCAAGAAATCCTCACGGAAATCGCGACGTATTCTCTCGGAAACCTAGATCAGATAAGCTATTACAAGCAGATTTCTACAGATGGAAATAGCAATTTCGATCTGAAAGTACGAGGCGTCGAAGCTAAAAAGAAGCACTTGCTCGCGTTGCTAGAAAT...

Protein

Download Protein FASTA

212 aa · TkA06G172090|TK1151|PROTEIN

LSLGFDSNSNSNSITNRPIQVLQCSSGSTGYLHTMQEILTEIATYSLGNLDQISYYKQISTDGNSNFDLKVRGVEAKKKHLLALLEMVDERYNQCLDEIHTVISAFHAVIELNPQVHACFALHTITFFYKSLRERISNYVLSMGSDFSSMDQGEEALSSFVPKQWALQQLRRKDHQLWHVELGIVQIELGITKTLQPLCTNFCLFNTVKYGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G172090`
TK1151 ID	TkA06G172090
OH-1004 ID	LXL04_025977
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.600
Protein coverage (%)	TK1151 91.038 / OH-1004 43.836 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G172090

Location Chr06:45157134-45157853 (-)

Description Similar to ATH1: Homeobox protein ATH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g32980`	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010227 floral organ abscission Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010371 regulation of gibberellin biosynthetic process Biological Process

GO:0090470 shoot organ boundary specification Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT2G16400

ath:AT2G27220

ath:AT4G32980

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.458

Rank 1 · TkA06G172090 · TK1151

Cytoplasm0.436

Rank 2 · TkA06G172090 · TK1151

Mitochondrion0.111

Rank 3 · TkA06G172090 · TK1151

Cell membrane0.072

Rank 4 · TkA06G172090 · TK1151

Endoplasmic reticulum0.064

Rank 5 · TkA06G172090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX30-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G172090	`PF07526`	POX	30	137	4e-22	79.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P48731`	Arabidopsis thaliana	sp\|P48731\|ATH1_ARATH Homeobox protein ATH1	42.900%	Swiss-Prot	Medium

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