TkA06G171040 | RubberDandelionOmics

Gene overview

TkA06G171040

Reference: TK1151 Chr: Chr06 Coordinates: 44885066-44887241 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1828 bp · TkA06G171040|TK1151|cDNA

CTGAATTGTCGTTTTTTCAAGAAATTATGACTTAAGAGTATTCAATAAGTCCAAATGTAATTATTTGCACAATGTGACCGACAAAAAAGCCTTGACATCTCGGTCATGAATTCAGTCTATAAATTTGAGCTGACAGTTAAGGAAAGAAATTAAAGCACCAACCACTTGGTAAAAACTCACAATAACACTTCACTACGAAATCATGGCAAAACCCCATGTTCTCGTCATACCTTATCCCGCACAAGGCCATGTAATCCCTA...

CDS

Download CDS FASTA

1440 bp · TkA06G171040|TK1151|CDS

ATGGCAAAACCCCATGTTCTCGTCATACCTTATCCCGCACAAGGCCATGTAATCCCTATAATGGAGCTTGCTCTACGATTAGTCAATCATGGTGTAAAAGTTACATTTGTAAACACAGAAGTCAATCACAAGCTTGTGACAAGCAACTCGTTAGTAACCGATGGTTCTAAGGATTTAATGCAGTTGGTTGCAATCCCTGACGGGTTAGAACCATGGGAGGACAGGAGCAACCTTTGTATGTTGACCAATTCAATATTACA...

Protein

Download Protein FASTA

479 aa · TkA06G171040|TK1151|PROTEIN

MAKPHVLVIPYPAQGHVIPIMELALRLVNHGVKVTFVNTEVNHKLVTSNSLVTDGSKDLMQLVAIPDGLEPWEDRSNLCMLTNSILQTMPHKLEMLIETINKEDSNKVTCIIADDGMGWAIKVAKKMGIARAAFWPASVASLACIMSFQRLIDDGIIDNNGIPISDQMIQLSETMPPFKSRNQLPWTCFEDLGTVKAIFQVVVEAVEAASLTEWFICNSSTELEAGALSLYPQLLPIGPLLASSRLGDQSGHFWQEDSTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G171040`
TK1151 ID	TkA06G171040
OH-1004 ID	LXL04_024160
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.600
Protein coverage (%)	TK1151 94.781 / OH-1004 98.696 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G171040

Location Chr06:44885066-44887241 (+)

Description Similar to UGT83A1: UDP-glycosyltransferase 83A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02100`	UDP-glycosyltransferase 83A1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024160 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0050057 linamarin synthase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

GO:0080044 quercetin 7-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ag:ABV68925

ag:AEO45781

ag:AEO45782

ath:AT3G02100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.695

Rank 1 · TkA06G171040 · TK1151

Nucleus0.186

Rank 2 · TkA06G171040 · TK1151

Endoplasmic reticulum0.085

Rank 3 · TkA06G171040 · TK1151

Plastid0.084

Rank 4 · TkA06G171040 · TK1151

Peroxisome0.067

Rank 5 · TkA06G171040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201UDPGT6-145 aa

PF26168Glyco_transf_N6-42 aa

PF30500DUF3084_C38-67 aa

PF08593Mug135_C48-83 aa

PF26168Glyco_transf_N87-131 aa

PF00201UDPGT271-428 aa

PF06722EryCIII-like_C329-434 aa

PF30500DUF3084_C404-458 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G171040	`PF00201`	UDPGT	6	145	8.3e-22	78.4
TkA06G171040	`PF26168`	Glyco_transf_N	6	42	0.00017	22.3
TkA06G171040	`PF30500`	DUF3084_C	38	67	0.13	13.0
TkA06G171040	`PF08593`	Mug135_C	48	83	0.09	13.8
TkA06G171040	`PF26168`	Glyco_transf_N	87	131	0.00017	22.3
TkA06G171040	`PF00201`	UDPGT	271	428	8.3e-22	78.4
TkA06G171040	`PF06722`	EryCIII-like_C	329	434	6.6e-06	26.9
TkA06G171040	`PF30500`	DUF3084_C	404	458	0.13	13.0
TkA06G171040	`PF16276`	NPM1-C	407	413	0.21	12.3
TkA06G171040	`PF16276`	NPM1-C	427	453	0.21	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGA8`	Arabidopsis thaliana	sp\|Q9SGA8\|U83A1_ARATH UDP-glycosyltransferase 83A1	44.500%	Swiss-Prot	Medium

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