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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G164390
Reference: TK1151 Chr: Chr06 Coordinates: 43261391-43263845 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2220 bp · TkA06G164390|TK1151|cDNA

ATGCTCACTTCAAAAGACCCTTCATCATGGAAAAGAAGCGCATGCTCACATGATTGGTACTTACACAACGGAAGTTGTTGGAAATCCCTCGAAATTTTCACGCGAATCCGAAGAGAAAACGTCGAATTGGATGCGACTACATTTGCTGTGGTTCTAAAAGCCTGTTTAGGTCTAGACGATCATACTCTAGGAATTCAAATTCATGGACTTTTAATCCGTCTGGGATTTGTTCACGATGTGGTTGCTGGTAGTGCGACTGT...

CDS

Download CDS FASTA

2220 bp · TkA06G164390|TK1151|CDS

ATGCTCACTTCAAAAGACCCTTCATCATGGAAAAGAAGCGCATGCTCACATGATTGGTACTTACACAACGGAAGTTGTTGGAAATCCCTCGAAATTTTCACGCGAATCCGAAGAGAAAACGTCGAATTGGATGCGACTACATTTGCTGTGGTTCTAAAAGCCTGTTTAGGTCTAGACGATCATACTCTAGGAATTCAAATTCATGGACTTTTAATCCGTCTGGGATTTGTTCACGATGTGGTTGCTGGTAGTGCGACTGT...

Protein

Download Protein FASTA

739 aa · TkA06G164390|TK1151|PROTEIN

MLTSKDPSSWKRSACSHDWYLHNGSCWKSLEIFTRIRRENVELDATTFAVVLKACLGLDDHTLGIQIHGLLIRLGFVHDVVAGSATVDMYAKCKKLNESITFFNEMPVKNWVSWSALIAGCVQNDEFLSGLKLFKNMQKEGLGVSQSTYASLFRSCAGLSSLQFGSQLHAHSLKMNFGSDSIVGTATLDMYAKCGQLSDSKKLFHTLSTHNLQSYNAIITGCVRGNQGFEALELFHNLRKTDLGFDDITLSGAFSACAVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G164390
TK1151 IDTkA06G164390
OH-1004 IDLXL04_024214
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.300
Protein coverage (%)TK1151 97.294 / OH-1004 84.192
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G164390
LocationChr06:43261391-43263845 (+)
DescriptionSimilar to PCMP-E90: Pentatricopeptide repeat-containing protein At3g02330, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008
At3g53360 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At5g09950 Putative pentatricopeptide repeat-containing protein At5g09950. No verified direct reference in this release
At2g33680 Pentatricopeptide repeat-containing protein At2g33680. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024214 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT3G02330
ath:AT3G09040
ath:AT4G39530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.675
Rank 1 · TkA06G164390 · TK1151
Plastid0.214
Rank 2 · TkA06G164390 · TK1151
Nucleus0.043
Rank 3 · TkA06G164390 · TK1151
Cytoplasm0.034
Rank 4 · TkA06G164390 · TK1151
Cell membrane0.006
Rank 5 · TkA06G164390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_218-55 aa
PF01535PPR19-41 aa
PF29070MSC6_N21-55 aa
PF20412RALGAPB_N24-63 aa
PF13762MNE127-62 aa
PF17177PPR_long28-56 aa
PF23276TPR_2428-61 aa
PF13812PPR_332-55 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G164390PF13041PPR_218552.3e-77255.6
TkA06G164390PF01535PPR19416.2e-68221.1
TkA06G164390PF29070MSC6_N21554.3e-1349.8
TkA06G164390PF20412RALGAPB_N24630.07513.7
TkA06G164390PF13762MNE127629e-0523.2
TkA06G164390PF17177PPR_long28561.4e-1764.5
TkA06G164390PF23276TPR_2428611.5e-1454.7
TkA06G164390PF13812PPR_332556.4e-2381.3
TkA06G164390PF26713TPR_RPO41_N34590.005217.1
TkA06G164390PF29978ATP18_TPR37700.001818.9
TkA06G164390PF19261DUF590471990.001219.6
TkA06G164390PF13041PPR_2791102.3e-77255.6
TkA06G164390PF17049AEP1861071.9e-0524.7
TkA06G164390PF01535PPR871096.2e-68221.1
TkA06G164390PF12854PPR_1881064.2e-33113.5
TkA06G164390PF29070MSC6_N881554.3e-1349.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial58.400%Swiss-ProtHigh
Q9LFI1Arabidopsis thalianasp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial34.300%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic34.600%Swiss-ProtMedium
Q9FIB2Arabidopsis thalianasp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g0995034.600%Swiss-ProtMedium
P93005Arabidopsis thalianasp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g3368035.000%Swiss-ProtMedium

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