TkA06G160980 | RubberDandelionOmics

Gene overview

TkA06G160980

Reference: TK1151 Chr: Chr06 Coordinates: 42419907-42424773 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1691 bp · TkA06G160980|TK1151|cDNA

CATTATCAAAGAAAAAACGGTTATTAAAAGATGGATCACCACCTTACAAGTTACATCTTTGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGAAACAGATTGGGGTTGGGCACCCTCATCGAAGCACCTCCAAAATACTCTTGCTCATAACCTTAACCCTAATCATCCTCACTGTCGTCCCTCTCTATTTCCCTTTCAACAAATTCCCGTCGCTATCTTCCTCCAACCATTCTTCCTCCCTTTCACCGGACAC...

CDS

Download CDS FASTA

888 bp · TkA06G160980|TK1151|CDS

ATGGATCACCACCTTACAAGTTACATCTTTGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGAAACAGATTGGGGTTGGGCACCCTCATCGAAGCACCTCCAAAATACTCTTGCTCATAACCTTAACCCTAATCATCCTCACTGTCGTCCCTCTCTATTTCCCTTTCAACAAATTCCCGTCGCTATCTTCCTCCAACCATTCTTCCTCCCTTTCACCGGACACCATCTCGCCGGAGAACCACTCACATGACCC...

Protein

Download Protein FASTA

295 aa · TkA06G160980|TK1151|PROTEIN

MDHHLTSYIFGLSLSLSLSLSLMKQIGVGHPHRSTSKILLLITLTLIILTVVPLYFPFNKFPSLSSSNHSSSLSPDTISPENHSHDPLITIDDNHHKCDVFSGEWVPNPKAPYYLNTTCWAIHEHQNCQKYGRPDSDFMKWRWKPDECDLPIFNPYQFLEIVRDKALAFVGDSVGRNHMQSLICMLSRVEYPIDVSTTKDENFKRWYYESYNFTLATYWSPFLVKFKEPNADDPTHTGIFSLYLDEYDVWTNQIDDFNYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G160980`
TK1151 ID	TkA06G160980
OH-1004 ID	LXL04_024235
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 83.729 / OH-1004 57.176 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G160980

Location Chr06:42419907-42424773 (-)

Description Similar to TBL19: Protein trichome birefringence-like 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15900`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g15890`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g02440`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At1g01430`	May be involved in the O-acetylation of mannan.	No verified direct reference in this release
`At4g01080`	May be involved in the O-acetylation of mannan.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024235 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010411 xyloglucan metabolic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G02440

ath:AT3G28150

ath:AT5G15890

ath:AT5G15900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.300

Rank 1 · TkA06G160980 · TK1151

Lysosome / Vacuole0.221

Rank 2 · TkA06G160980 · TK1151

Endoplasmic reticulum0.218

Rank 3 · TkA06G160980 · TK1151

Cell membrane0.084

Rank 4 · TkA06G160980 · TK1151

Cytoplasm0.075

Rank 5 · TkA06G160980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N97-149 aa

PF16557CUTL116-134 aa

PF13839PC-Esterase150-292 aa

PF16557CUTL178-208 aa

PF14416PMR5N265-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G160980	`PF14416`	PMR5N	97	149	5.4e-21	75.4
TkA06G160980	`PF16557`	CUTL	116	134	0.0073	17.4
TkA06G160980	`PF13839`	PC-Esterase	150	292	2.6e-43	149.7
TkA06G160980	`PF16557`	CUTL	178	208	0.0073	17.4
TkA06G160980	`PF14416`	PMR5N	265	278	5.4e-21	75.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFT0`	Arabidopsis thaliana	sp\|Q9LFT0\|TBL19_ARATH Protein trichome birefringence-like 19	57.800%	Swiss-Prot	High
`Q9LFT1`	Arabidopsis thaliana	sp\|Q9LFT1\|TBL21_ARATH Protein trichome birefringence-like 21	60.000%	Swiss-Prot	High
`Q9M896`	Arabidopsis thaliana	sp\|Q9M896\|TBL20_ARATH Protein trichome birefringence-like 20	60.700%	Swiss-Prot	Medium
`Q84JH9`	Arabidopsis thaliana	sp\|Q84JH9\|TBL25_ARATH Protein trichome birefringence-like 25	47.200%	Swiss-Prot	Medium
`O04621`	Arabidopsis thaliana	sp\|O04621\|TBL26_ARATH Protein trichome birefringence-like 26	46.700%	Swiss-Prot	Medium

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