LXL04_024235 | RubberDandelionOmics

Gene overview

LXL04_024235

Reference: OH-1004 Chr: Chr05 Coordinates: 85479882-85484801 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1363 bp · LXL04_024235|LXL04_024235|OH1004|cDNA

ATGGATACCTTACAAGTTACATCTTTggactctctctctctctctctctctctctctctctctcatgaAACAGATTGGGGTTGGGCACCCTCATCGAAGCACCTCCAAAATACTCTTGCTCATAACCTTAACCCTAATCATCCTCACTGTCGTCCCTCTCTATTTCCCTTTCAACAAATTCCCGTCGCTATCTTCCTCCAACCATTCTTCCTCCCTTTCACCGGACACCATCTCGCCGGAGAACCACTCACATGACCCAC...

CDS

Download CDS FASTA

1299 bp · LXL04_024235|LXL04_024235|OH1004|CDS

ATGAAACAGATTGGGGTTGGGCACCCTCATCGAAGCACCTCCAAAATACTCTTGCTCATAACCTTAACCCTAATCATCCTCACTGTCGTCCCTCTCTATTTCCCTTTCAACAAATTCCCGTCGCTATCTTCCTCCAACCATTCTTCCTCCCTTTCACCGGACACCATCTCGCCGGAGAACCACTCACATGACCCACTCATCACTATCGACGATAACCACCACAAATGCGATGTGTTTTCCGGCGAGTGGGTACCAAACCC...

Protein

Download Protein FASTA

432 aa · LXL04_024235|LXL04_024235|OH1004|PROTEIN

MKQIGVGHPHRSTSKILLLITLTLIILTVVPLYFPFNKFPSLSSSNHSSSLSPDTISPENHSHDPLITIDDNHHKCDVFSGEWVPNPKAPYYLNTTCWAIHEHQNCQKYGRPDSDFMKWRWKPDECDLSIFNPYQFLEIVRDKALAFVGDSVGRNHMQSLICMLSRVEYPIDVSTTKDENFKRWYYESYNFTLATYWSPFLVKFKEPNADDPTHTGIFNLYLDEYDVWTNQIDDFNYLIINGGHWFSRPSLYYEKGQIIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024235`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024235

Location Chr05:85479882-85484801 (+)

Description Similar to TBL19: Protein trichome birefringence-like 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15900`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g15890`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g02440`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g28150`	Xyloglucan acetyltransferase that catalyzes the acetylation of fucosylated Gal residues on xyloglucan side chains.	O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain.2011 · DOI: 10.1105/tpc.111.091728 Xyloglucan O-acetyltransferases from Arabidopsis thaliana and Populus trichocarpa catalyze acetylation of fucosylated galactose residues on xyloglucan side chains.2018 · DOI: 10.1007/s00425-018-2972-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024235 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010411 xyloglucan metabolic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G02440

ath:AT3G28150

ath:AT5G15890

ath:AT5G15900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.491

Rank 1 · LXL04_024235 · OH-1004

Endoplasmic reticulum0.099

Rank 2 · LXL04_024235 · OH-1004

Lysosome / Vacuole0.081

Rank 3 · LXL04_024235 · OH-1004

Cell membrane0.078

Rank 4 · LXL04_024235 · OH-1004

Extracellular0.068

Rank 5 · LXL04_024235 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N75-127 aa

PF13839.13PC-Esterase128-415 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024235	`PF14416.12`	PMR5N	75	127	9.7e-21	74.6
LXL04_024235	`PF13839.13`	PC-Esterase	128	415	1.4e-92	311.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LFT0`	Arabidopsis thaliana	Protein trichome birefringence-like 19	57.702%	Swiss-Prot	strong database homology
`Q9LFT1`	Arabidopsis thaliana	Protein trichome birefringence-like 21	57.256%	Swiss-Prot	strong database homology
`Q9M896`	Arabidopsis thaliana	Protein trichome birefringence-like 20	59.012%	Swiss-Prot	strong database homology
`Q9LRS2`	Arabidopsis thaliana	xyloglucan O-acetyltransferase 2	41.954%	Swiss-Prot	moderate database homology

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