RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G151540
Reference: TK1151 Chr: Chr06 Coordinates: 39697911-39699005 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

879 bp · TkA06G151540|TK1151|cDNA

ATGGATCGGATCAAAGGTCCATGGAGCCCTGAAGAAGACGAGTTGCTTCAGCAGCTTGTTGAGAAACATGGGGCTAGAAATTGGTCGCTTATTGGTAAATCTATACCTGGTAGATCTGGGAAATCGTGTAGGTTACGGTGGTGTAACCAGCTGTCGCCACAGGTGGAGCACCGTGCGTTTACGCCGGAAGAAGACGAGACGATTCTTCGTGCTCATGCTCGGTTTGGGAACAAGTGGGCGACGATTGCCCGGTTATTGTC...

CDS

Download CDS FASTA

879 bp · TkA06G151540|TK1151|CDS

ATGGATCGGATCAAAGGTCCATGGAGCCCTGAAGAAGACGAGTTGCTTCAGCAGCTTGTTGAGAAACATGGGGCTAGAAATTGGTCGCTTATTGGTAAATCTATACCTGGTAGATCTGGGAAATCGTGTAGGTTACGGTGGTGTAACCAGCTGTCGCCACAGGTGGAGCACCGTGCGTTTACGCCGGAAGAAGACGAGACGATTCTTCGTGCTCATGCTCGGTTTGGGAACAAGTGGGCGACGATTGCCCGGTTATTGTC...

Protein

Download Protein FASTA

292 aa · TkA06G151540|TK1151|PROTEIN

MDRIKGPWSPEEDELLQQLVEKHGARNWSLIGKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMTNEEFSEFAIQQPSLKRSVSAGSAVAASGRFLNPGSPSGSDVSDSSVPATSSSHVYRPVARTGAVTIDPPTLLSLSLPGVENEASTGAPTPMQLMPASPMAISSAMHQLKEKAFTPFNAEFLSVMQEMIRTEVRNYMTGVEQHNHQQRSGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G151540
TK1151 IDTkA06G151540
OH-1004 IDLXL04_013573
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)62.100
Protein coverage (%)TK1151 98.288 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G151540
LocationChr06:39697911-39699005 (-)
DescriptionSimilar to MYB44: Transcription factor MYB44
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37260 Transcription factor that functions in salt stress response.
Loss of the R2R3 MYB, AtMyb73, causes hyper-induction of the SOS1 and SOS3 genes in response to high salinity in Arabidopsis.2013 · DOI: 10.1016/j.jplph.2013.05.011
At5g67300 Transcription factor.
Overexpression of AtMYB44 enhances stomatal closure to confer abiotic stress tolerance in transgenic Arabidopsis.2008 · DOI: 10.1104/pp.107.110981
Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants.1998 · DOI: 10.1023/a:1006011002499
At3g50060 Transcription factor involved in auxin response.
The Arabidopsis transcription factor MYB77 modulates auxin signal transduction.2007 · DOI: 10.1105/tpc.107.050963
At3g09230 Transcription factor MYB1. No verified direct reference in this release
At2g39880 Required for male gametophyte (pollen) development. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013573 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009408 response to heat Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009555 pollen development Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0010929 positive regulation of auxin mediated signaling pathway Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
KEGG gene cross-reference
ath:AT2G39880
ath:AT3G09230
ath:AT3G50060
ath:AT4G37260
ath:AT5G67300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942
Rank 1 · TkA06G151540 · TK1151
Cytoplasm0.167
Rank 2 · TkA06G151540 · TK1151
Mitochondrion0.018
Rank 3 · TkA06G151540 · TK1151
Cell membrane0.017
Rank 4 · TkA06G151540 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA06G151540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding5-51 aa
PF15963Myb_DNA-bind_77-46 aa
PF23082Myb_DNA-binding_27-40 aa
PF13921Myb_DNA-bind_68-67 aa
PF09111SLIDE8-35 aa
PF08914Myb_Rap19-55 aa
PF20222DUF658127-49 aa
PF09111SLIDE52-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G151540PF00249Myb_DNA-binding5512.2e-39134.0
TkA06G151540PF15963Myb_DNA-bind_77460.005817.1
TkA06G151540PF23082Myb_DNA-binding_27400.03614.9
TkA06G151540PF13921Myb_DNA-bind_68679.4e-30103.3
TkA06G151540PF09111SLIDE8350.004417.8
TkA06G151540PF08914Myb_Rap19550.04115.0
TkA06G151540PF20222DUF658127490.310.7
TkA06G151540PF09111SLIDE521010.004417.8
TkA06G151540PF00249Myb_DNA-binding591012.2e-39134.0
TkA06G151540PF13921Myb_DNA-bind_6601089.4e-30103.3
TkA06G151540PF08914Myb_Rap160770.04115.0
TkA06G151540PF15963Myb_DNA-bind_7611070.005817.1
TkA06G151540PF23082Myb_DNA-binding_2771080.03614.9
TkA06G151540PF20222DUF6581781100.310.7
TkA06G151540PF09111SLIDE871210.004417.8
TkA06G151540PF09111SLIDE2232340.004417.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O23160Arabidopsis thalianasp|O23160|MYB73_ARATH Transcription factor MYB7350.200%Swiss-ProtHigh
Q9FDW1Arabidopsis thalianasp|Q9FDW1|MYB44_ARATH Transcription factor MYB4450.300%Swiss-ProtHigh
Q9SN12Arabidopsis thalianasp|Q9SN12|MYB77_ARATH Transcription factor MYB7750.000%Swiss-ProtHigh
Q42575Arabidopsis thalianasp|Q42575|MYB1_ARATH Transcription factor MYB168.300%Swiss-ProtLow
O04192Arabidopsis thalianasp|O04192|MYB25_ARATH Transcription factor MYB2546.300%Swiss-ProtMedium

JBrowse

View in Genome Browser