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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G149130
Reference: TK1151 Chr: Chr06 Coordinates: 39121646-39126829 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4129 bp · TkA06G149130|TK1151|cDNA

AACGAACCAAATAGGGTTTCTAACGTACAAATTGAAGACACAAACTTGTAAATTGGAATCCCTTTGGAAGCGAAATCTAAATACCGCCCTCTTTCTGGCATATTCCCCAAGTCCTGTGGAGCAGCTGCGTCACCGAACAAATCTTCCCGTTCAAACTGTTTCATCTGCCAAGGAAACCGTAATCGAGTTCCAGGGAGGAACAATGATGCCGCCGCCATCAATTTCATCAACAAGAAAAGGCAAAAAAGAGGTGGAGGACA...

CDS

Download CDS FASTA

945 bp · TkA06G149130|TK1151|CDS

ATGAAAAAGGCTGAAGTTGATGAAAAGTATAAGTCAGTTATTGCCAAAAGGGAATCAGACCTCAAATTGAAACAGATTACTAACGATAGGTCCAAACTTCCAATTGCATCCTTTAAAGATGTTATTACATCAACAATAGAATCCAATCAAGTTGTTCTCATATCTGGTGAAACTGGATGTGGAAAGACCACACAAGTACCTCAATATTTGTTGGATCATATGTGGAGTAAGGGTAGTGCATGTAAAATTGTATGCACCCA...

Protein

Download Protein FASTA

314 aa · TkA06G149130|TK1151|PROTEIN

MKKAEVDEKYKSVIAKRESDLKLKQITNDRSKLPIASFKDVITSTIESNQVVLISGETGCGKTTQVPQYLLDHMWSKGSACKIVCTQPRRISAITVAERIAQERGESIGESVGYKIRLDTKGGRHSSIVFCTNGVLLRVLVKAGSGRSAKEASSKKVKDSFPDITHIIVDEIHERDRFSDFMLTIIRDMLPLYPHLRVVLMSATLDAERFSQYFGGCPVICVPGFTYNVKQLYLEDVLLIVNSKKDCHLDFTSKTELTEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G149130
TK1151 IDTkA06G149130
OH-1004 IDLXL04_021311
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)52.100
Protein coverage (%)TK1151 66.561 / OH-1004 15.896
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G149130
LocationChr06:39121646-39126829 (-)
DescriptionSimilar to At2g01130: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30800 May function as an ATP-dependent RNA/DNA helicase. No verified direct reference in this release
At1g06670 May function as an ATP-dependent RNA/DNA helicase. No verified direct reference in this release
At1g48650 DExH-box ATP-dependent RNA helicase DExH3. No verified direct reference in this release
At2g35920 DExH-box ATP-dependent RNA helicase DExH1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021311 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001503 ossification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006359 regulation of transcription by RNA polymerase III Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0009615 response to virus Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031442 positive regulation of mRNA 3'-end processing Biological Process
GO:0032206 positive regulation of telomere maintenance Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0034644 cellular response to UV Biological Process
KEGG gene cross-reference
ath:AT1G48650
ath:AT2G01130
ath:AT2G35920
bta:509583
mmu:72162
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.612
Rank 1 · TkA06G149130 · TK1151
Cytoplasm0.439
Rank 2 · TkA06G149130 · TK1151
Mitochondrion0.058
Rank 3 · TkA06G149130 · TK1151
Cell membrane0.031
Rank 4 · TkA06G149130 · TK1151
Endoplasmic reticulum0.028
Rank 5 · TkA06G149130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13481AAA_2519-71 aa
PF01580FtsK_SpoIIIE21-67 aa
PF06745ATPase35-86 aa
PF00158Sigma54_activat37-66 aa
PF24883NPHP3_N38-84 aa
PF13555AAA_2938-65 aa
PF02367TsaE39-67 aa
PF13086AAA_1139-102 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G149130PF13481AAA_2519710.02315.1
TkA06G149130PF01580FtsK_SpoIIIE21670.2111.7
TkA06G149130PF06745ATPase35862.5e-0524.5
TkA06G149130PF00158Sigma54_activat37660.06313.7
TkA06G149130PF24883NPHP3_N38840.01616.1
TkA06G149130PF13555AAA_2938650.1412.7
TkA06G149130PF02367TsaE39670.113.3
TkA06G149130PF13086AAA_11391020.1312.8
TkA06G149130PF12775AAA_740770.007516.5
TkA06G149130PF04851ResIII412040.004117.8
TkA06G149130PF00005ABC_tran42650.03215.6
TkA06G149130PF02562PhoH42890.04114.1
TkA06G149130PF00270DEAD432065.6e-1349.7
TkA06G149130PF20720nSTAND343923.5e-0524.2
TkA06G149130PF03215Rad1744660.04614.4
TkA06G149130PF00437T2SSE44680.1411.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4INY4Arabidopsis thalianasp|F4INY4|HVT1_ARATH DExH-box ATP-dependent RNA helicase DExH664.800%Swiss-ProtHigh
F4IDQ6Arabidopsis thalianasp|F4IDQ6|NIH_ARATH DExH-box ATP-dependent RNA helicase DExH259.400%Swiss-ProtHigh
F4HYJ7Arabidopsis thalianasp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH352.600%Swiss-ProtMedium
F4ILR7Arabidopsis thalianasp|F4ILR7|DEXH1_ARATH DExH-box ATP-dependent RNA helicase DExH147.700%Swiss-ProtMedium

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