TkA06G146890 | RubberDandelionOmics

Gene overview

TkA06G146890

Reference: TK1151 Chr: Chr06 Coordinates: 38505432-38508759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2051 bp · TkA06G146890|TK1151|cDNA

CAATTTGGTGTGAAAATTGACATTTCTCTCGATATCATGTTTAGATACATACGTCTCTCTAAATTTTCACCAAAATGTCAACATTCTCAACTAAAAAACCAAGAAACAAATACTATAATTTTAAAGAGAAAATAAAACCAAACGGAATAATCGAGGTATCTCCGCATCTCTTTTCTGCATAAATATCTATATCTCTTTGATGATTCCAAAATTACTAGGTCGCCTTTGCATTACGTCGACACCCCATGTTCATGGTCTAC...

CDS

Download CDS FASTA

1227 bp · TkA06G146890|TK1151|CDS

ATGGGCAGAAAGGGTGGTGTTGAATCGAGTGATAACAATCAAAGAATTGATGGACCAATAACCAAAGAACAAGGAAAGGGGAAGAAATTATGGAAGAAGATGAAGTATCAGCTGGTTGAATACCATTCGTTGCCTGCGTATATGAAAGATAACGAATTCATATTAGGCCATTATCGTGCTGAATGGCCTCTCAAGCAGATTTTTTTGAGCATCTTCTCCCTTCACAACGAAACCCTTAACGTTTGGACACATTTGATTGG...

Protein

Download Protein FASTA

408 aa · TkA06G146890|TK1151|PROTEIN

MGRKGGVESSDNNQRIDGPITKEQGKGKKLWKKMKYQLVEYHSLPAYMKDNEFILGHYRAEWPLKQIFLSIFSLHNETLNVWTHLIGFFLFLTLTIYSTKMINVVDIPTLKHFPDVLRRADVYKLREDLLTCIPSLPNMPDLQKLRHEIKTSFHASSDLLPLMSNWHIVELLTNCLPERFSHSNHTDVCVLQSMKEDVANIIAPLMTHPTTKWPFFAFLGGAMFCLLASSLCHLLCCHSKRLSYIMLRIDYAGIAALIST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G146890`
TK1151 ID	TkA06G146890
OH-1004 ID	LXL04_024407
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 99.270 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G146890

Location Chr06:38505432-38508759 (-)

Description Similar to ADIPOR3: Heptahelical transmembrane protein ADIPOR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37680`	May play a role in abiotic stress response.	No verified direct reference in this release
`At4g38320`	May play a role in abiotic stress response.	No verified direct reference in this release
`At5g20270`	May act as a negative regulator of abscisic acid (ABA)- mediated osmotic stress signaling and function in cross-talk between cold and osmotic signaling.	HHP1 is involved in osmotic stress sensitivity in Arabidopsis.2009 · DOI: 10.1093/jxb/erp039 HHP1, a novel signalling component in the cross-talk between the cold and osmotic signalling pathways in Arabidopsis.2010 · DOI: 10.1093/jxb/erq162

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0232900`	May play a role in abiotic stress response.	No verified direct reference in this release
`Os06g0643700`	May play a role in abiotic stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024407 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009725 response to hormone Biological Process

GO:0009744 response to sucrose Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0038023 signaling receptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G24150

ath:AT4G30850

ath:AT4G37680

ath:AT4G38320

dosa:Os03g0232900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.451

Rank 1 · TkA06G146890 · TK1151

Cytoplasm0.185

Rank 2 · TkA06G146890 · TK1151

Endoplasmic reticulum0.171

Rank 3 · TkA06G146890 · TK1151

Lysosome / Vacuole0.133

Rank 4 · TkA06G146890 · TK1151

Golgi apparatus0.124

Rank 5 · TkA06G146890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03006HlyIII72-393 aa

PF07204Orthoreo_P10210-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G146890	`PF03006`	HlyIII	72	393	5.9e-62	210.0
TkA06G146890	`PF07204`	Orthoreo_P10	210	241	0.13	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZG0`	Arabidopsis thaliana	sp\|Q9SZG0\|HHP4_ARATH Heptahelical transmembrane protein 4	68.800%	Swiss-Prot	High
`Q9SVF3`	Arabidopsis thaliana	sp\|Q9SVF3\|HPP5_ARATH Heptahelical transmembrane protein 5	67.100%	Swiss-Prot	High
`Q93ZH9`	Arabidopsis thaliana	sp\|Q93ZH9\|HHP1_ARATH Heptahelical transmembrane protein 1	39.500%	Swiss-Prot	Medium
`Q10PI5`	Oryza sativa subsp. japonica	sp\|Q10PI5\|ADPO3_ORYSJ Heptahelical transmembrane protein ADIPOR3	65.800%	Swiss-Prot	High
`B7F9G7`	Oryza sativa subsp. japonica	sp\|B7F9G7\|ADPO1_ORYSJ Heptahelical transmembrane protein ADIPOR1	38.000%	Swiss-Prot	Medium

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