TkA06G145220 | RubberDandelionOmics

Gene overview

TkA06G145220

Reference: TK1151 Chr: Chr06 Coordinates: 38057268-38058130 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · TkA06G145220|TK1151|cDNA

ATGGGTATACATATTGATTCACCAATGAGGGTGCCAGCAGAGCAGTTTACTTCAATAAGGGCGTTTGGTGCTCCAGCAATTGTGTTAGCCTTGGCTGCACAAGGAATTTTTCGTGGCTTTAAGGATACCAAGACTCCTCTTTATGCCATTGCTGCTGGAAACTTGGTAAATGTGATATTGGATGGAATATTGATTTTCTTTTTTGGACTTGGCATTGGAGGTGCTGCAATCGCGACGGTAATATCTGAATATCTGATTGC...

CDS

Download CDS FASTA

546 bp · TkA06G145220|TK1151|CDS

ATGGGTATACATATTGATTCACCAATGAGGGTGCCAGCAGAGCAGTTTACTTCAATAAGGGCGTTTGGTGCTCCAGCAATTGTGTTAGCCTTGGCTGCACAAGGAATTTTTCGTGGCTTTAAGGATACCAAGACTCCTCTTTATGCCATTGCTGCTGGAAACTTGGTAAATGTGATATTGGATGGAATATTGATTTTCTTTTTTGGACTTGGCATTGGAGGTGCTGCAATCGCGACGGTAATATCTGAATATCTGATTGC...

Protein

Download Protein FASTA

181 aa · TkA06G145220|TK1151|PROTEIN

MGIHIDSPMRVPAEQFTSIRAFGAPAIVLALAAQGIFRGFKDTKTPLYAIAAGNLVNVILDGILIFFFGLGIGGAAIATVISEYLIAVILLWKLNKEVVLVTPNIDGKKVGQYLKSGGLLMWRSFAVLVTMTLSTSVAAREGPVPMDGHQICLEVWLALSLLIDALALAGQVNYSYTSQHP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G145220`
TK1151 ID	TkA06G145220
OH-1004 ID	LXL04_019197
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.200
Protein coverage (%)	TK1151 95.580 / OH-1004 31.059 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G145220

Location Chr06:38057268-38058130 (+)

Description Similar to DTX44: Protein DETOXIFICATION 44, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38330`	Protein DETOXIFICATION 44, chloroplastic.	No verified direct reference in this release
`At4g38380`	Protein DETOXIFICATION 45, chloroplastic.	No verified direct reference in this release
`At3g08040`	Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots.	FRD3, a member of the multidrug and toxin efflux family, controls iron deficiency responses in Arabidopsis.2002 · DOI: 10.1105/tpc.001495 FRD3 controls iron localization in Arabidopsis.2004 · DOI: 10.1104/pp.104.045633 The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation.2007 · DOI: 10.1104/pp.107.097162 The FRD3 citrate effluxer promotes iron nutrition between symplastically disconnected tissues throughout Arabidopsis development.2011 · DOI: 10.1105/tpc.111.088088
`At1g51340`	Citrate transporter critical for aluminum tolerance.	Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance.2009 · DOI: 10.1111/j.1365-313x.2008.03696.x A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance.2012 · DOI: 10.1111/j.1365-313x.2012.04994.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019197 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006879 intracellular iron ion homeostasis Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010044 response to aluminum ion Biological Process

GO:0015746 citrate transport Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0030001 metal ion transport Biological Process

GO:0034220 monoatomic ion transmembrane transport Biological Process

GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

KEGG gene cross-reference

ath:AT1G51340

ath:AT2G21340

ath:AT2G38330

ath:AT3G08040

ath:AT4G38380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.480

Rank 1 · TkA06G145220 · TK1151

Cell membrane0.198

Rank 2 · TkA06G145220 · TK1151

Endoplasmic reticulum0.133

Rank 3 · TkA06G145220 · TK1151

Golgi apparatus0.124

Rank 4 · TkA06G145220 · TK1151

Cytoplasm0.117

Rank 5 · TkA06G145220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05072Herpes_UL435-90 aa

PF01554MatE12-61 aa

PF03023MurJ22-134 aa

PF12648TcpE54-117 aa

PF01554MatE64-82 aa

PF01554MatE125-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G145220	`PF05072`	Herpes_UL43	5	90	0.074	12.8
TkA06G145220	`PF01554`	MatE	12	61	1.2e-07	32.3
TkA06G145220	`PF03023`	MurJ	22	134	5.8e-06	25.9
TkA06G145220	`PF12648`	TcpE	54	117	0.13	13.4
TkA06G145220	`PF01554`	MatE	64	82	1.2e-07	32.3
TkA06G145220	`PF01554`	MatE	125	170	1.2e-07	32.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84K71`	Arabidopsis thaliana	sp\|Q84K71\|DTX44_ARATH Protein DETOXIFICATION 44, chloroplastic	67.300%	Swiss-Prot	High
`Q9SVE7`	Arabidopsis thaliana	sp\|Q9SVE7\|DTX45_ARATH Protein DETOXIFICATION 45, chloroplastic	55.600%	Swiss-Prot	High
`Q9SFB0`	Arabidopsis thaliana	sp\|Q9SFB0\|DTX43_ARATH Protein DETOXIFICATION 43	53.800%	Swiss-Prot	High
`Q9SYD6`	Arabidopsis thaliana	sp\|Q9SYD6\|DTX42_ARATH Protein DETOXIFICATION 42	52.000%	Swiss-Prot	High

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