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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G131640
Reference: TK1151 Chr: Chr06 Coordinates: 34395195-34398280 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2437 bp · TkA06G131640|TK1151|cDNA

CTAGGGTTAGGTTTGTTTAACCCAAGCAATATGATTGTGTGATCACTCGGGGCTCCATTATCATATTTTCAGAGGAACAATCAGAAAGTTTTAAGGGAGAAGATACGCCGGAAAAATTAGGGTTTAAGCAGTTTTGGTGTTCATTTCTGCAGAATTTAGGGTTAGGGACTGGTCATCTAATCAGTTAGGGTTGCAATTTAAGATTTTTGTTCTGTTAGGTTTTTATTCGTGCTGGTAAAAAAACTAAATTTGGAGCTGCT...

CDS

Download CDS FASTA

1380 bp · TkA06G131640|TK1151|CDS

ATGGACGAGATCTGGGAGAGGGCGGTGGAGACAGCGCTAGATGGCCAAACCGATGTCGCGTCGGTCCGGACGTTAACCCTCGACGGAGCGGTGAAGTGCGTGCACGGCCGTCTACCACATCCGTCTCTGTTCCAGAAGTTTCCTCACCTACAACACCTATCTATTGCAAACATAGGCGTTTCATCGCTTGAGCAGTTCCCGCGTTTACAAAACCTTCAGAAGTTGATTTTGTCGGACAATCGGATTGCTGGTGGTTTGGA...

Protein

Download Protein FASTA

459 aa · TkA06G131640|TK1151|PROTEIN

MDEIWERAVETALDGQTDVASVRTLTLDGAVKCVHGRLPHPSLFQKFPHLQHLSIANIGVSSLEQFPRLQNLQKLILSDNRIAGGLEFLVHAGLDSLRDLDLSNNRIQEIDDLRPLAELRLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDVDENERPESDDEDDDDEDEEDDEEEEEDDPGSGEIDGEEKGPNRLANGHTIGQDGVVDVDEDDESDADEEEAEIVRGSNGNASSSLAGQTNGFHAESVDVEDDDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G131640
TK1151 IDTkA06G131640
OH-1004 IDLXL04_024556
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 86.275 / OH-1004 86.275
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G131640
LocationChr06:34395195-34398280 (-)
DescriptionSimilar to At3g50690: Acidic leucine-rich nuclear phosphoprotein 32-related protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g50690 Acidic leucine-rich nuclear phosphoprotein 32-related protein. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0607800 Acidic leucine-rich nuclear phosphoprotein 32-related protein 1. No verified direct reference in this release
Os03g0668900 Acidic leucine-rich nuclear phosphoprotein 32-related protein 2. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024556 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0048471 perinuclear region of cytoplasm Cellular Component
GO:0042393 histone binding Molecular Function
KEGG gene cross-reference
ath:AT3G50690
dme:Dmel_CG5784
dosa:Os03g0668900
dosa:Os07g0607800
dpo:4805386
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901
Rank 1 · TkA06G131640 · TK1151
Cytoplasm0.300
Rank 2 · TkA06G131640 · TK1151
Mitochondrion0.024
Rank 3 · TkA06G131640 · TK1151
Cell membrane0.020
Rank 4 · TkA06G131640 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA06G131640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_840-82 aa
PF25019LRR_R13L1-DRL2141-77 aa
PF25013LRR_Zer-143-79 aa
PF12799LRR_444-66 aa
PF24048LRR_NXF1-544-80 aa
PF23598LRR_1446-157 aa
PF13516LRR_648-56 aa
PF00560LRR_149-57 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G131640PF13855LRR_840822.8e-0730.9
TkA06G131640PF25019LRR_R13L1-DRL2141770.3111.6
TkA06G131640PF25013LRR_Zer-143790.0008720.2
TkA06G131640PF12799LRR_444669.4e-1348.7
TkA06G131640PF24048LRR_NXF1-544800.1612.4
TkA06G131640PF23598LRR_14461570.009415.5
TkA06G131640PF13516LRR_648560.005917.3
TkA06G131640PF00560LRR_149570.0001721.8
TkA06G131640PF14580LRR_9591659.5e-1348.8
TkA06G131640PF25019LRR_R13L1-DRL21631240.3111.6
TkA06G131640PF29460LRR_NXF2691490.07213.6
TkA06G131640PF12799LRR_4701149.4e-1348.7
TkA06G131640PF13516LRR_670830.005917.3
TkA06G131640PF13855LRR_8711242.8e-0730.9
TkA06G131640PF00560LRR_171850.0001721.8
TkA06G131640PF24048LRR_NXF1-5721320.1612.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SCQ7Arabidopsis thalianasp|Q9SCQ7|AN32_ARATH Acidic leucine-rich nuclear phosphoprotein 32-related protein64.200%Swiss-ProtHigh
Q6YSF3Oryza sativa subsp. japonicasp|Q6YSF3|AN321_ORYSJ Acidic leucine-rich nuclear phosphoprotein 32-related protein 156.600%Swiss-ProtHigh
Q7Y180Oryza sativa subsp. japonicasp|Q7Y180|AN322_ORYSJ Acidic leucine-rich nuclear phosphoprotein 32-related protein 241.600%Swiss-ProtLow

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