LXL04_024556 | RubberDandelionOmics

Gene overview

LXL04_024556

Reference: OH-1004 Chr: Chr05 Coordinates: 93683780-93685809 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1380 bp · LXL04_024556|LXL04_024556|OH1004|cDNA

ATGGACGAGATCTGGGAGAGGGCGGTGGAGACAGCGCTAGATGGCCAAACCGATGTCGCGTCGGTCCGGACGTTAACCCTCGACGGAGCGGTGAAGTGCGTGCACGGCCGTCTACCACATCCGTCTCTGTTCCAGAAGTTTCCTCACCTACAACACCTATCTATTGCAAACATAGGCGTTTCATCGCTTGAGCAGTTCCCGCGTTTACAAAACCTTCAGAAGTTGATTTTGTCGGACAATCGGATTGCTGGTGGTTTGGA...

CDS

Download CDS FASTA

1380 bp · LXL04_024556|LXL04_024556|OH1004|CDS

ATGGACGAGATCTGGGAGAGGGCGGTGGAGACAGCGCTAGATGGCCAAACCGATGTCGCGTCGGTCCGGACGTTAACCCTCGACGGAGCGGTGAAGTGCGTGCACGGCCGTCTACCACATCCGTCTCTGTTCCAGAAGTTTCCTCACCTACAACACCTATCTATTGCAAACATAGGCGTTTCATCGCTTGAGCAGTTCCCGCGTTTACAAAACCTTCAGAAGTTGATTTTGTCGGACAATCGGATTGCTGGTGGTTTGGA...

Protein

Download Protein FASTA

459 aa · LXL04_024556|LXL04_024556|OH1004|PROTEIN

MDEIWERAVETALDGQTDVASVRTLTLDGAVKCVHGRLPHPSLFQKFPHLQHLSIANIGVSSLEQFPRLQNLQKLILSDNRIAGGLEFLVHAGLDSLRDLDLSNNRIQEIDDLRPLAELRLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDVDENERPESDDEDDDDEDEEDDEEEEEDDPGSGEIDGEEKGPNRLANGHTIGQDGVVDVDEDDESDADEEEAEIVRGSNGNASSSLAGQTNGFHAESVDVEDDDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024556`
TK1151 ID	TkA06G131640
OH-1004 ID	LXL04_024556
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 86.275 / OH-1004 86.275 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024556

Location Chr05:93683780-93685809 (+)

Description Similar to At3g50690: Acidic leucine-rich nuclear phosphoprotein 32-related protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50690`	Acidic leucine-rich nuclear phosphoprotein 32-related protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0607800`	Acidic leucine-rich nuclear phosphoprotein 32-related protein 1.	No verified direct reference in this release
`Os03g0668900`	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024556 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0042393 histone binding Molecular Function

KEGG gene cross-reference

ath:AT3G50690

dme:Dmel_CG5784

dosa:Os03g0668900

dosa:Os07g0607800

dpo:4805386

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.904

Rank 1 · LXL04_024556 · OH-1004

Cytoplasm0.297

Rank 2 · LXL04_024556 · OH-1004

Mitochondrion0.023

Rank 3 · LXL04_024556 · OH-1004

Cell membrane0.020

Rank 4 · LXL04_024556 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_024556 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14580.13LRR_959-165 aa

PF12799.14LRR_470-114 aa

PF13855.13LRR_871-124 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024556	`PF14580.13`	LRR_9	59	165	9.4e-13	48.8
LXL04_024556	`PF12799.14`	LRR_4	70	114	9.4e-13	48.7
LXL04_024556	`PF13855.13`	LRR_8	71	124	2.8e-07	30.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCQ7`	Arabidopsis thaliana	Acidic leucine-rich nuclear phosphoprotein 32-related protein	61.461%	Swiss-Prot	strong database homology
`Q6YSF3`	Oryza sativa subsp. japonica	Acidic leucine-rich nuclear phosphoprotein 32-related protein 1	63.948%	Swiss-Prot	weak database homology
`Q7Y180`	Oryza sativa subsp. japonica	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2	51.079%	Swiss-Prot	weak database homology

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