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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G125400
Reference: TK1151 Chr: Chr06 Coordinates: 32810432-32810980 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

549 bp · TkA06G125400|TK1151|cDNA

ATGGAAGAAATCACAAATCTACTCTTCGATCTTCAAACTCTTAATGAAGAGGCCAAATCCACTCACAGCCGCAAAGTCCTTCGCGGATTACGAGACCGAATGGAATCCGACATGGTTTCCGTTCTCAGAAAAGCAACCGTCGTCAAAACACGTCTCGAATGTCTCGACAATTCCAACGAATTGAACAAAAAATCTTCATACAAAGAAAACAGTGCTGTCGATCGAACATGGGTTTCCGTCACCAACGGACTTAGATCAAA...

CDS

Download CDS FASTA

549 bp · TkA06G125400|TK1151|CDS

ATGGAAGAAATCACAAATCTACTCTTCGATCTTCAAACTCTTAATGAAGAGGCCAAATCCACTCACAGCCGCAAAGTCCTTCGCGGATTACGAGACCGAATGGAATCCGACATGGTTTCCGTTCTCAGAAAAGCAACCGTCGTCAAAACACGTCTCGAATGTCTCGACAATTCCAACGAATTGAACAAAAAATCTTCATACAAAGAAAACAGTGCTGTCGATCGAACATGGGTTTCCGTCACCAACGGACTTAGATCAAA...

Protein

Download Protein FASTA

182 aa · TkA06G125400|TK1151|PROTEIN

MEEITNLLFDLQTLNEEAKSTHSRKVLRGLRDRMESDMVSVLRKATVVKTRLECLDNSNELNKKSSYKENSAVDRTWVSVTNGLRSKLKEMMNDFQDLRDKIVSDHKDYLKKRYYNETGEYPSDGIMETMVSGNGKVFEGKKDVVMENKERHEAVMDIKRSLNRLHQVFLDMAILVEEQGRI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G125400
TK1151 IDTkA06G125400
OH-1004 IDLXL04_024598
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.400
Protein coverage (%)TK1151 98.901 / OH-1004 59.801
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G125400
LocationChr06:32810432-32810980 (+)
DescriptionSimilar to SYP112: Syntaxin-112
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18260 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At3g52400 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At4g03330 Vesicle trafficking protein that functions in the secretory pathway (Probable).
Syntaxin of plant proteins SYP123 and SYP132 mediate root hair tip growth in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu048
At3g11820 Vesicle trafficking protein that functions in the secretory pathway (By similarity).
Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0736500 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024598 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0006887 exocytosis Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0048278 vesicle docking Biological Process
GO:0051301 cell division Biological Process
GO:0061025 membrane fusion Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009504 cell plate Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009524 phragmoplast Cellular Component
KEGG gene cross-reference
ath:AT1G08560
ath:AT1G61290
ath:AT2G18260
ath:AT4G03330
osa:107276918
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.599
Rank 1 · TkA06G125400 · TK1151
Nucleus0.219
Rank 2 · TkA06G125400 · TK1151
Cell membrane0.157
Rank 3 · TkA06G125400 · TK1151
Lysosome / Vacuole0.106
Rank 4 · TkA06G125400 · TK1151
Golgi apparatus0.068
Rank 5 · TkA06G125400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00804Syntaxin1-138 aa
PF30799DUF499_4th5-49 aa
PF05757PsbQ8-42 aa
PF13339AATF-Che116-24 aa
PF05919Mitovir_RNA_pol22-162 aa
PF30563DUF863028-63 aa
PF05739SNARE32-55 aa
PF08698Fcf248-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G125400PF00804Syntaxin11384e-33115.2
TkA06G125400PF30799DUF499_4th5490.05513.9
TkA06G125400PF05757PsbQ8420.001319.5
TkA06G125400PF13339AATF-Che116240.06214.6
TkA06G125400PF05919Mitovir_RNA_pol221620.1212.1
TkA06G125400PF30563DUF863028630.009316.4
TkA06G125400PF05739SNARE32558.8e-0935.8
TkA06G125400PF08698Fcf248710.07714.0
TkA06G125400PF13339AATF-Che1541320.06214.6
TkA06G125400PF14362DUF4407591550.09612.7
TkA06G125400PF30799DUF499_4th691460.05513.9
TkA06G125400PF05757PsbQ741110.001319.5
TkA06G125400PF05739SNARE87978.8e-0935.8
TkA06G125400PF08698Fcf2871550.07714.0
TkA06G125400PF30563DUF8630881060.009316.4
TkA06G125400PF30563DUF86301421670.009316.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPV9Arabidopsis thalianasp|Q9ZPV9|SY112_ARATH Syntaxin-11258.100%Swiss-ProtHigh
Q9SVC2Arabidopsis thalianasp|Q9SVC2|SY122_ARATH Syntaxin-12237.400%Swiss-ProtMedium
Q9ZQZ8Arabidopsis thalianasp|Q9ZQZ8|SY123_ARATH Syntaxin-12339.900%Swiss-ProtMedium
Q9ZSD4Arabidopsis thalianasp|Q9ZSD4|SY121_ARATH Syntaxin-12137.200%Swiss-ProtMedium
Q84R43Oryza sativa subsp. japonicasp|Q84R43|SY111_ORYSJ Syntaxin-11140.900%Swiss-ProtMedium

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