TkA06G124510 | RubberDandelionOmics

Gene overview

TkA06G124510

Reference: TK1151 Chr: Chr06 Coordinates: 32447686-32450133 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1902 bp · TkA06G124510|TK1151|cDNA

AAATGTATTTATTAGCTTTAAATTATAGTAATAATAAAGTGTGGGAGAGGGTTTTACAAGCCGAGCTGGCAAGCCTAGAGGGTTTCTTGTTGTTGCTTCTAGTTATCCTTTCTTATAATAAGTTGGGTATATGCATGAACCAATGTAAATACCAATGATTCCTTCACGATTGGATGTTTAATTCCAAATTTCGTCGTACTTTCATGTGATCATTATTATAAAAATCCTCTCGTTATCTGTTCATGCCTAATTTCAACTAG...

CDS

Download CDS FASTA

1116 bp · TkA06G124510|TK1151|CDS

ATGGCAACATATGTCGAGCCTCCAAACGGATTCAGGCAAATAGGGAAGCATTATTACACTATGTGGCAACAATTGTTTGAAATCGATACAAAATATATTCCGATCAAACCAATCGGCAGGGGAGCGTACGGTGTTGTTTGTTCTTCGATCAACAGAGAAACAAACGAGAAAGTTGCAATCAAGAAGATCAACAATGTGTTTGGAAATCCTACTGACGCGTTAAGAACACTAAGAGAATTGAAGCTTCTCCGACATATCAG...

Protein

Download Protein FASTA

371 aa · TkA06G124510|TK1151|PROTEIN

MATYVEPPNGFRQIGKHYYTMWQQLFEIDTKYIPIKPIGRGAYGVVCSSINRETNEKVAIKKINNVFGNPTDALRTLRELKLLRHIRHENVIGLKDVMFPIYRNSFKDVYLVYELMDTDLHHIIKSSQPLSNDHCKFFLFQLLRGLKYLHSANVLHRDLKPGNLLVNANCELKICDFGLARTSQGSEQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPLFPGTECLNQLKLIINILGSQNEDDIGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G124510`
TK1151 ID	TkA06G124510
OH-1004 ID	LXL04_024615
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 98.670 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G124510

Location Chr06:32447686-32450133 (-)

Description Similar to MPK7: Mitogen-activated protein kinase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g18170`	MKK3-MPK7 module acts as a positive regulator of PR1 gene expression.	The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling.2007 · DOI: 10.1105/tpc.106.050039
`At4g36450`	Mitogen-activated protein kinase 14.	No verified direct reference in this release
`At1g59580`	Mitogen-activated protein kinase 2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0699400`	Mitogen-activated protein kinase 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004707 MAP kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G18170

dosa:Os02g0148100

dosa:Os06g0699400

osa:4328297

osa:4341956

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.628

Rank 1 · TkA06G124510 · TK1151

Nucleus0.548

Rank 2 · TkA06G124510 · TK1151

Cell membrane0.068

Rank 3 · TkA06G124510 · TK1151

Mitochondrion0.045

Rank 4 · TkA06G124510 · TK1151

Endoplasmic reticulum0.029

Rank 5 · TkA06G124510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase35-319 aa

PF07714PK_Tyr_Ser-Thr36-229 aa

PF06293Kdo67-176 aa

PF01636APH73-152 aa

PF12330Haspin_kinase99-184 aa

PF03109ABC1146-185 aa

PF01636APH154-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G124510	`PF00069`	Pkinase	35	319	1.5e-68	231.8
TkA06G124510	`PF07714`	PK_Tyr_Ser-Thr	36	229	1.5e-30	107.1
TkA06G124510	`PF06293`	Kdo	67	176	0.00012	22.4
TkA06G124510	`PF01636`	APH	73	152	0.15	12.5
TkA06G124510	`PF12330`	Haspin_kinase	99	184	0.00028	20.8
TkA06G124510	`PF03109`	ABC1	146	185	8.6e-05	22.5
TkA06G124510	`PF01636`	APH	154	180	0.15	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39027`	Arabidopsis thaliana	sp\|Q39027\|MPK7_ARATH Mitogen-activated protein kinase 7	82.600%	Swiss-Prot	High
`O23236`	Arabidopsis thaliana	sp\|O23236\|MPK14_ARATH Mitogen-activated protein kinase 14	78.000%	Swiss-Prot	High
`Q39022`	Arabidopsis thaliana	sp\|Q39022\|MPK2_ARATH Mitogen-activated protein kinase 2	76.200%	Swiss-Prot	High
`Q5Z859`	Oryza sativa subsp. japonica	sp\|Q5Z859\|MPK4_ORYSJ Mitogen-activated protein kinase 4	77.300%	Swiss-Prot	High

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