TkA06G121680 | RubberDandelionOmics

Gene overview

TkA06G121680

Reference: TK1151 Chr: Chr06 Coordinates: 31711503-31714354 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1574 bp · TkA06G121680|TK1151|cDNA

ATCCCCCATCTCTTTCTTCTCTCTACAGGTACGGAAGTGCAGAAGTGAGAGGGGATTGAAATAAGGACCACCCACCTCCATTTCCGGCAACCCATTCACGATCCCACCTCTCTCTTTAAATCCTTAAAGCGGACGCCTCCCAACCACTTACCCTTGTCTCCTTCCATCTGGTGAACACACATTCGGGTATTTTTTATCTCTCTCTCTCTCTCGATCGATCGATCGATTGACACATAGCAAATTCCTACCCTTTAATTCGA...

CDS

Download CDS FASTA

546 bp · TkA06G121680|TK1151|CDS

ATGACTATCATTGGTCAGATCAAAACACTTTCATTGATCAAGAGATTACAGAAGCACATCCGACACTGTGTCACATGTTCTTCAGGAAAAACATGCTACAGAATGTTACAGGAGAGAAGTGTGGGGATTGATAAGTTCTCATATACTATACGCGCCTCTCTATATTGCTGGACCAATCATAAGCTTCAATACATTTGCCTCTCAGTTGGATACACCTCAGAAGAATTATACACTAAAACAAGTGACATGGTAAGTGGTAT...

Protein

Download Protein FASTA

181 aa · TkA06G121680|TK1151|PROTEIN

MTIIGQIKTLSLIKRLQKHIRHCVTCSSGKTCYRMLQERSVGIDKFSYTIRASLYCWTNHKLQYICLSVGYTSEELYTKTSDMVSGIEVPENMPRCINNCYNLESFWIFNKWLVRYKYILLGGSRRKLLNVWVVFTFVAIWHDLEWKLLSWAWLTCIFFIPEMIVKSAATSFKADNVRFVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G121680`
TK1151 ID	TkA06G121680
OH-1004 ID	LXL04_010304
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.000
Protein coverage (%)	TK1151 52.486 / OH-1004 16.077 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G121680`
Location	Chr06:31711503-31714354 (+)
Description	Similar to SPAC24H6.01c: Putative membrane-bound O-acyltransferase C24H6.01c (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010304` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006506 GPI anchor biosynthetic process Biological Process GO:0009267 cellular response to starvation Biological Process GO:0015793 glycerol transmembrane transport Biological Process GO:0019563 glycerol catabolic process Biological Process GO:0030447 filamentous growth Biological Process GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation Biological Process GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus Biological Process GO:0044011 single-species biofilm formation on inanimate substrate Biological Process GO:0071475 cellular hyperosmotic salinity response Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	cal:CAALFM_C113540WA sce:YGL084C sce:YPL189W spo:2541508 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.589

Rank 1 · TkA06G121680 · TK1151

Nucleus0.152

Rank 2 · TkA06G121680 · TK1151

Cytoplasm0.118

Rank 3 · TkA06G121680 · TK1151

Mitochondrion0.093

Rank 4 · TkA06G121680 · TK1151

Golgi apparatus0.077

Rank 5 · TkA06G121680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03062MBOAT71-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G121680	`PF03062`	MBOAT	71	168	9.7e-20	71.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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