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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G117170
Reference: TK1151 Chr: Chr06 Coordinates: 30675605-30678238 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1014 bp · TkA06G117170|TK1151|cDNA

GTCCTTTGTCGTTTCCTTTCACCTTCTTAAAATAATTTCCTCTTTCCCGTAAATGCAATATAACCAACACTTCGTCTTGTTATTACAACCTTCACACAAATATCCTAAAAGCCTTAACAACCCTCTTCTAAATCCATCAACAATGGAGGTGTACGCATACCCATCTCATTTTATGCAATCATCTGCACTAGTTTCTTCATTTTCATTTAGGAATTTGGTTTTCAAAGTTAAAGATTTCATTAGCTCTGCAGTTTCCATGG...

CDS

Download CDS FASTA

807 bp · TkA06G117170|TK1151|CDS

ATGCAATATAACCAACACTTCGTCTTGTTATTACAACCTTCACACAAATATCCTAAAAGCCTTAACAACCCTCTTCTAAATCCATCAACAATGGAGGTGTACGCATACCCATCTCATTTTATGCAATCATCTGCACTAGTTTCTTCATTTTCATTTAGGAATTTGGTTTTCAAAGTTAAAGATTTCATTAGCTCTGCAGTTTCCATGGTTATTGGAAATGTCTTCTCTGCAATTTTCACCTTCTTCTTCGCGTTAGGAAC...

Protein

Download Protein FASTA

268 aa · TkA06G117170|TK1151|PROTEIN

MQYNQHFVLLLQPSHKYPKSLNNPLLNPSTMEVYAYPSHFMQSSALVSSFSFRNLVFKVKDFISSAVSMVIGNVFSAIFTFFFALGTLLGALTGALIGQETESGFVRGSAIGAISGAVFSIEVFESSLVLWKSDESGIGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNLFDIGGSKGLTEYSVEKIPKVAITRDNDVDESGELVSCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLVRHGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G117170
TK1151 IDTkA06G117170
OH-1004 IDLXL04_024694
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G117170
LocationChr06:30675605-30678238 (+)
DescriptionSimilar to NIP2: NEP1-interacting protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17730 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At4g35840 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At5g66070 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At1g74410 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024694 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0006952 defense response Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0042170 plastid membrane Cellular Component
KEGG gene cross-reference
ath:AT1G74410
ath:AT2G17450
ath:AT2G17730
ath:AT4G35840
ath:AT5G66070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.363
Rank 1 · TkA06G117170 · TK1151
Nucleus0.233
Rank 2 · TkA06G117170 · TK1151
Cytoplasm0.209
Rank 3 · TkA06G117170 · TK1151
Golgi apparatus0.145
Rank 4 · TkA06G117170 · TK1151
Cell membrane0.138
Rank 5 · TkA06G117170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07114TMEM12642-119 aa
PF31172Gly-zipper_C13G5-265-99 aa
PF17647DUF551869-134 aa
PF27527Y2009_N83-98 aa
PF10247Romo183-98 aa
PF13436Gly-zipper_OmpA84-119 aa
PF13441Gly-zipper_YMGG85-118 aa
PF05433Rick_17kDa_Anti85-118 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G117170PF07114TMEM126421190.1212.4
TkA06G117170PF31172Gly-zipper_C13G5-265990.3611.6
TkA06G117170PF17647DUF5518691340.1313.1
TkA06G117170PF27527Y2009_N83981.49.5
TkA06G117170PF10247Romo183988.47.6
TkA06G117170PF13436Gly-zipper_OmpA841190.0001122.6
TkA06G117170PF13441Gly-zipper_YMGG851185.5e-0523.8
TkA06G117170PF05433Rick_17kDa_Anti851180.003417.9
TkA06G117170PF31172Gly-zipper_C13G5-2851190.3611.6
TkA06G117170PF13488Gly-zipper_Omp861180.0001921.9
TkA06G117170PF10247Romo11021208.47.6
TkA06G117170PF27527Y2009_N1031181.49.5
TkA06G117170PF04423Rad50_zn_hook2192302.28.9
TkA06G117170PF14446Prok-RING_12212610.1213.2
TkA06G117170PF11793FANCL_C2212563.58.7
TkA06G117170PF13639zf-RING_22222652.9e-1350.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GT74Arabidopsis thalianasp|Q8GT74|NIP2_ARATH NEP1-interacting protein 282.400%Swiss-ProtMedium
Q8GT75Arabidopsis thalianasp|Q8GT75|NIP1_ARATH NEP1-interacting protein 179.400%Swiss-ProtMedium
Q9FKX5Arabidopsis thalianasp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 178.200%Swiss-ProtMedium
Q8LBA0Arabidopsis thalianasp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 235.600%Swiss-ProtMedium
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP141.000%Swiss-ProtLow

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