RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G112080
Reference: TK1151 Chr: Chr06 Coordinates: 29396065-29400959 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

637 bp · TkA06G112080|TK1151|cDNA

TTATGCACCATTTTAAACATGTACAGCATATAGCTGCATCATTAGGGAGCACGAAGATGACCCGCATATTGATCGAAGAAAAAGGGGCAAACATTAATGCTCGTGATGATGATGGAAATACGCCTTTATATCTAGCTTTGACTGAAAAACACGATGAAGTGATTGAGTTGCTTATTGGAAAAGGCGCCACATTAATGATAGAGGATGAAGAGGACATCGGTGAATTTATGTGTGTAGCAGCAGCAACTGATAATGTTGCT...

CDS

Download CDS FASTA

1998 bp · TkA06G112080|TK1151|CDS

ATGAGTTTACCATTGGCTAACAACCGGAGAGATCGCTTCGTCTCACCTAACTTGGGCAGGATTACGTATGGAACTTCTATCCCTCATTCAGCTGTCATTGCTCGCACTGCTGCCTCTCTCGCTGTATGGTATCAGCAGTGGTGGGAACCTGTTTGTGCCGTGGTGGCATTACTATCTACGTTGATAACAGCACTACAGTTTTCGTTTTTCGAGGTGTCACCTAAAACGCTGACATACTTGGAAGGAGTTGAGGGTTTTAT...

Protein

Download Protein FASTA

665 aa · TkA06G112080|TK1151|PROTEIN

MSLPLANNRRDRFVSPNLGRITYGTSIPHSAVIARTAASLAVWYQQWWEPVCAVVALLSTLITALQFSFFEVSPKTLTYLEGVEGFILLHTCLHSILVYINLPREKRRRYILCYILPRCFMSLPWVFFYYITGRKIFRWILLLRMLRLEKVHRLFSVTEDSRVGFISTRYLKTLVVKLIAFHLGACIFFFSAITIPVGQEGKTWLGSLTLGEISYSNFRHVGFLRLYIICLYFSAITITTIGYGDIHPVTSFDMIIAIVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G112080
TK1151 IDTkA06G112080
OH-1004 IDLXL04_024755
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 99.106
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G112080
LocationChr06:29396065-29400959 (-)
DescriptionSimilar to GORK: Potassium channel GORK
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g37500 Major selective outward-rectifying potassium channel of the guard cell membrane.
The Arabidopsis outward K+ channel GORK is involved in regulation of stomatal movements and plant transpiration.2003 · DOI: 10.1073/pnas.0733970100
At3g02850 Highly selective outward-rectifying potassium channel.
Identification and disruption of a plant shaker-like outward channel involved in K+ release into the xylem sap.1998 · DOI: 10.1016/s0092-8674(00)81606-2
At4g22200 Highly selective and weak inward-rectifying potassium channel.
Loss of the AKT2/3 potassium channel affects sugar loading into the phloem of Arabidopsis.2002 · DOI: 10.1007/s00425-002-0895-1
Regulated expression of Arabidopsis shaker K+ channel genes involved in K+ uptake and distribution in the plant.2003 · DOI: 10.1023/a:1022597102282

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0250600 Probable outward-rectifying potassium channel. No verified direct reference in this release
Os04g0445000 Probable outward-rectifying potassium channel. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024755 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006811 monoatomic ion transport Biological Process
GO:0006813 potassium ion transport Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0010118 stomatal movement Biological Process
GO:0051592 response to calcium ion Biological Process
GO:0055075 potassium ion homeostasis Biological Process
GO:1902458 positive regulation of stomatal opening Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G02850
ath:AT5G37500
dosa:Os04g0445000
dosa:Os06g0250600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.419
Rank 1 · TkA06G112080 · TK1151
Endoplasmic reticulum0.233
Rank 2 · TkA06G112080 · TK1151
Cytoplasm0.188
Rank 3 · TkA06G112080 · TK1151
Lysosome / Vacuole0.161
Rank 4 · TkA06G112080 · TK1151
Golgi apparatus0.135
Rank 5 · TkA06G112080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00520Ion_trans46-259 aa
PF07885Ion_trans_2188-194 aa
PF07885Ion_trans_2227-261 aa
PF23745ANK_LRRK2259-277 aa
PF00027cNMP_binding355-442 aa
PF23745ANK_LRRK2465-495 aa
PF12796Ank_2493-569 aa
PF13857Ank_5497-547 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G112080PF00520Ion_trans462599.1e-1038.8
TkA06G112080PF07885Ion_trans_21881945.8e-0936.4
TkA06G112080PF07885Ion_trans_22272615.8e-0936.4
TkA06G112080PF23745ANK_LRRK22592770.009816.5
TkA06G112080PF00027cNMP_binding3554421.1e-1248.5
TkA06G112080PF23745ANK_LRRK24654950.009816.5
TkA06G112080PF12796Ank_24935695.1e-2588.6
TkA06G112080PF13857Ank_54975471.5e-1764.2
TkA06G112080PF13637Ank_44985265.3e-2071.8
TkA06G112080PF00023Ank5055381.8e-2485.1
TkA06G112080PF13606Ank_35055358.7e-1863.1
TkA06G112080PF24521Ank_KRIT15065620.01915.4
TkA06G112080PF13637Ank_45105605.3e-2071.8
TkA06G112080PF23745ANK_LRRK25116030.009816.5
TkA06G112080PF00023Ank5395701.8e-2485.1
TkA06G112080PF13606Ank_35395668.7e-1863.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94A76Arabidopsis thalianasp|Q94A76|GORK_ARATH Potassium channel GORK32.000%Swiss-ProtMedium
Q9M8S6Arabidopsis thalianasp|Q9M8S6|SKOR_ARATH Potassium channel SKOR31.400%Swiss-ProtMedium
Q38898Arabidopsis thalianasp|Q38898|AKT2_ARATH Potassium channel AKT2/325.600%Swiss-ProtLow
Q653P0Oryza sativa subsp. japonicasp|Q653P0|KOR1_ORYSJ Potassium channel KOR130.500%Swiss-ProtMedium
Q7XUW4Oryza sativa subsp. japonicasp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR229.800%Swiss-ProtLow

JBrowse

View in Genome Browser