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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G099450
Reference: TK1151 Chr: Chr06 Coordinates: 26533647-26535569 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1109 bp · TkA06G099450|TK1151|cDNA

ATTTTCTTTTATAAAAATTCTAATATACTAGGAAAAAAGCATTACTCATCAAAATTTCAAAAGTTTAATCAAAATCCTCAATTTTACAAAACTAGAGTGACGAAAAGAGTAATTTACTCCTAAAATGTTAATACTTTCTACATTAAAAATCCTTACGGTCATCTAACTGTTGGCGAACAAGGAAGCGTACACATAAATACCTGCTCCAGAATAGCCCAAGGTTTTCCCTCCTCTTGCTTTTTGATACCAATTCCTTACTC...

CDS

Download CDS FASTA

555 bp · TkA06G099450|TK1151|CDS

ATGGGTTTGTGGGATTCTTTTCTCAATTGGCTTCGCAGTTTGTTCTTTAAACAGGAAATGGAGCTTTCCCTAGTAGGCCTTCAAGATGCTGGAAAGACATCTCTCGTGAATTCCATTGCTACAGGCGGCTATAGCGAGGACATGATTCCAACTGTTGGATTTAATATGCGAAAAGTCACTAAAGGAAATGTCACAATTAAGCTTTGGGATCTTGGAGGACAACGGAGGTTTCGTACCATGTGGGAAAGATATTGTCGAGG...

Protein

Download Protein FASTA

184 aa · TkA06G099450|TK1151|PROTEIN

MGLWDSFLNWLRSLFFKQEMELSLVGLQDAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVTAILYVVDAADRDSIPITKTELHDLLTKPSLNGIPLLVLGNKIDKSQALTKQALVDQLGLDTITDREVCCYMISCKESINIDMVIDWLIKHSKTAT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G099450
TK1151 IDTkA06G099450
OH-1004 IDLXL04_024867
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G099450
LocationChr06:26533647-26535569 (+)
DescriptionSimilar to ARL8C: ADP-ribosylation factor-like protein 8c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g37680 May play a role in lysosome motility. No verified direct reference in this release
At5g67560 May play a role in lysosome motility. No verified direct reference in this release
At3g49870 May play a role in lysosome motility. No verified direct reference in this release
At3g49860 May play a role in lysosome motility. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024867 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002505 antigen processing and presentation of polysaccharide antigen via MHC class II Biological Process
GO:0002747 antigen processing and presentation following phagocytosis Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0015031 protein transport Biological Process
GO:0016197 endosomal transport Biological Process
GO:0032418 lysosome localization Biological Process
GO:0034058 endosomal vesicle fusion Biological Process
GO:0034498 early endosome to Golgi transport Biological Process
GO:0046754 viral exocytosis Biological Process
GO:0051301 cell division Biological Process
GO:0051607 defense response to virus Biological Process
GO:0061909 autophagosome-lysosome fusion Biological Process
KEGG gene cross-reference
ath:AT3G49870
ath:AT5G37680
ath:AT5G67560
mmu:67166
rno:500282
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.389
Rank 1 · TkA06G099450 · TK1151
Golgi apparatus0.333
Rank 2 · TkA06G099450 · TK1151
Endoplasmic reticulum0.215
Rank 3 · TkA06G099450 · TK1151
Lysosome / Vacuole0.175
Rank 4 · TkA06G099450 · TK1151
Cell membrane0.172
Rank 5 · TkA06G099450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf9-178 aa
PF12775AAA_79-67 aa
PF00503G-alpha17-40 aa
PF00009GTP_EFTU20-41 aa
PF08477Roc22-132 aa
PF09439SRPRB22-146 aa
PF00071Ras23-179 aa
PF01926MMR_HSR123-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G099450PF00025Arf91784.9e-44150.6
TkA06G099450PF12775AAA_79670.1512.3
TkA06G099450PF00503G-alpha17405.4e-0833.1
TkA06G099450PF00009GTP_EFTU20418.3e-0729.5
TkA06G099450PF08477Roc221326.2e-1659.4
TkA06G099450PF09439SRPRB221465.3e-0833.2
TkA06G099450PF00071Ras231791.4e-1867.7
TkA06G099450PF01926MMR_HSR1231302.9e-0628.1
TkA06G099450PF04670Gtr1_RagA241452.4e-0834.4
TkA06G099450PF00350Dynamin_N24400.007617.0
TkA06G099450PF03029ATP_bind_125400.04914.1
TkA06G099450PF00503G-alpha491025.4e-0833.1
TkA06G099450PF00009GTP_EFTU561808.3e-0729.5
TkA06G099450PF03029ATP_bind_1661410.04914.1
TkA06G099450PF00350Dynamin_N79990.007617.0
TkA06G099450PF16897MMR_HSR1_Xtn1051740.01316.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W4C8Arabidopsis thalianasp|Q8W4C8|ARL8C_ARATH ADP-ribosylation factor-like protein 8c88.600%Swiss-ProtHigh
Q93Y31Arabidopsis thalianasp|Q93Y31|ARL8B_ARATH ADP-ribosylation factor-like protein 8b79.200%Swiss-ProtHigh
Q8VY57Arabidopsis thalianasp|Q8VY57|ARL8A_ARATH ADP-ribosylation factor-like protein 8a79.700%Swiss-ProtHigh
F4IZ82Arabidopsis thalianasp|F4IZ82|ARL8D_ARATH ADP-ribosylation factor-like protein 8d68.700%Swiss-ProtHigh

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