TkA06G084780 | RubberDandelionOmics

Gene overview

TkA06G084780

Reference: TK1151 Chr: Chr06 Coordinates: 22637431-22638564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

495 bp · TkA06G084780|TK1151|cDNA

TATAACTTACTTTCCAAGCTAGCAAAAGAAGAAAGTCTAGGCAAAAGTCCAACAAAAATAAGGCCCTTGAACCCATGCATAGCGAGAGAAGTAATTGATGAAGAAGGATGGCTTCATACTGGAGACATAGGGTTGTGGGCACCTGGAGGCCGATTAAAGATTATTGATATGAAAAAAAATATTTTTAAGTTGGCACAAGGAGAGTACATTGCTCCTGAGAAAATTGAGAATGTATATGTTAAGAGCAAATACGTGGCGCA...

CDS

Download CDS FASTA

495 bp · TkA06G084780|TK1151|CDS

TATAACTTACTTTCCAAGCTAGCAAAAGAAGAAAGTCTAGGCAAAAGTCCAACAAAAATAAGGCCCTTGAACCCATGCATAGCGAGAGAAGTAATTGATGAAGAAGGATGGCTTCATACTGGAGACATAGGGTTGTGGGCACCTGGAGGCCGATTAAAGATTATTGATATGAAAAAAAATATTTTTAAGTTGGCACAAGGAGAGTACATTGCTCCTGAGAAAATTGAGAATGTATATGTTAAGAGCAAATACGTGGCGCA...

Protein

Download Protein FASTA

164 aa · TkA06G084780|TK1151|PROTEIN

YNLLSKLAKEESLGKSPTKIRPLNPCIAREVIDEEGWLHTGDIGLWAPGGRLKIIDMKKNIFKLAQGEYIAPEKIENVYVKSKYVAQCFVYGDSFNSSLVVVVSVDPDMLKAFAAKEGIKNNCAMTQGQGLQFLLTWMPLEKSSGNLLFFFLFLINPHLLILSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G084780`
TK1151 ID	TkA06G084780
OH-1004 ID	LXL04_023084
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	78.300
Protein coverage (%)	TK1151 93.293 / OH-1004 85.185 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G084780

Location Chr06:22637431-22638564 (+)

Description Similar to LACS6: Long chain acyl-CoA synthetase 6, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05970`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation (Probable).	Two long-chain acyl-CoA synthetases from Arabidopsis thaliana involved in peroxisomal fatty acid beta-oxidation.2002 · DOI: 10.1046/j.1365-313x.2002.01405.x Molecular characterization of an Arabidopsis acyl-coenzyme a synthetase localized on glyoxysomal membranes.2002 · DOI: 10.1104/pp.012955 Peroxisomal Acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019646 Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis.2006 · DOI: 10.1093/jxb/erl045
`At5g27600`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation (Probable).	Two long-chain acyl-CoA synthetases from Arabidopsis thaliana involved in peroxisomal fatty acid beta-oxidation.2002 · DOI: 10.1046/j.1365-313x.2002.01405.x Peroxisomal Acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.019646 Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis.2006 · DOI: 10.1093/jxb/erl045

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023084 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001676 long-chain fatty acid metabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0007584 response to nutrient Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0010193 response to ozone Biological Process

GO:0010747 positive regulation of long-chain fatty acid import across plasma membrane Biological Process

GO:0010867 positive regulation of triglyceride biosynthetic process Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0032000 positive regulation of fatty acid beta-oxidation Biological Process

KEGG gene cross-reference

ath:AT3G05970

ath:AT5G27600

hsa:51703

mmu:433256

rno:94340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.301

Rank 1 · TkA06G084780 · TK1151

Endoplasmic reticulum0.250

Rank 2 · TkA06G084780 · TK1151

Cytoplasm0.202

Rank 3 · TkA06G084780 · TK1151

Mitochondrion0.147

Rank 4 · TkA06G084780 · TK1151

Nucleus0.087

Rank 5 · TkA06G084780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23562AMP-binding_C_363-104 aa

PF13193AMP-binding_C74-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G084780	`PF23562`	AMP-binding_C_3	63	104	0.18	12.9
TkA06G084780	`PF13193`	AMP-binding_C	74	109	0.00024	22.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPS1`	Arabidopsis thaliana	sp\|Q8LPS1\|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal	84.800%	Swiss-Prot	Medium
`Q8LKS5`	Arabidopsis thaliana	sp\|Q8LKS5\|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal	77.200%	Swiss-Prot	Medium

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