TkA06G080880 | RubberDandelionOmics

Gene overview

TkA06G080880

Reference: TK1151 Chr: Chr06 Coordinates: 21715892-21721854 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1173 bp · TkA06G080880|TK1151|cDNA

AGAAAGGCAAAGCTTCTCACTGGAAAAATGGAAACCGTTGCAAAGACATTTGTCAGAGAGTTTCTATGACCAGTCCTTGATAGACTTGCTGTGTTAAGCTCGGAGACAGAAACCCTAGAATGCAGCAAGAGATGGCGTCGGAGGGATCAGCGGTTATCGTTCCTAGGAGCTTTAGATTACTAGAAGAGCTTGAAAGAGGCGAGAAGGGAATTGGTGATGGAAGTGTGAGCTATGGAATGGATGATGCTGATGATGTTTAC...

CDS

Download CDS FASTA

879 bp · TkA06G080880|TK1151|CDS

ATGATTCTCTCTCCCACATACACATACAACAACTTTTTTGAAATGATTCACCAAGTTCTCTGGCTTTCATGCCTCATCTCCCCTCTCTTCTTCCATCTATCATCATCCGCCATAGACTCCTTCATATATGGTGGATGTTCACAACCACGGTTCACCCCTGGCTCACCCTACGAGTCCAATGTCAACTCTATACTCACCTCCTTAGTCAACTCCGCTTCTTTCTCCAACTTCAACAACTTCAAGATCTCTGTACCAGGGTC...

Protein

Download Protein FASTA

292 aa · TkA06G080880|TK1151|PROTEIN

MILSPTYTYNNFFEMIHQVLWLSCLISPLFFHLSSSAIDSFIYGGCSQPRFTPGSPYESNVNSILTSLVNSASFSNFNNFKISVPGSTQSDIVYGLFQCRGDLNTRDCRDCVAHAVSRLGVICPGSTGGAMQLDGCFVKYDSSSFLGVEDKTEVFKKCGSSIGYNSDILTRRDVVLAYMAAGNGQYFRVGGSGSVQGVAQCVQDLSLSECQDCLEEAGGRVKAECGASAWGDMYLGKCYVRYSERGFHSRSDDDDGDVDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G080880`
TK1151 ID	TkA06G080880
OH-1004 ID	LXL04_021182
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.900
Protein coverage (%)	TK1151 77.740 / OH-1004 70.476 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G080880

Location Chr06:21715892-21721854 (+)

Description Similar to PDLP6: Plasmodesmata-located protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g37660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At1g23260`	Has no ubiquitin ligase activity on its own.	No verified direct reference in this release
`At1g70660`	Has no ubiquitin ligase activity on its own.	No verified direct reference in this release
`At3g52560`	Has no ubiquitin ligase activity on its own.	Arabidopsis UEV1D promotes Lysine-63-linked polyubiquitination and is involved in DNA damage response.2008 · DOI: 10.1105/tpc.107.051862

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021182 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009615 response to virus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051707 response to other organism Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0001872 (1->3)-beta-D-glucan binding Molecular Function

KEGG gene cross-reference

ath:AT1G70690

ath:AT2G01660

ath:AT3G22060

ath:AT3G60720

ath:AT5G37660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.741

Rank 1 · TkA06G080880 · TK1151

Extracellular0.110

Rank 2 · TkA06G080880 · TK1151

Endoplasmic reticulum0.087

Rank 3 · TkA06G080880 · TK1151

Cytoplasm0.073

Rank 4 · TkA06G080880 · TK1151

Lysosome / Vacuole0.035

Rank 5 · TkA06G080880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657Stress-antifung46-142 aa

PF01657Stress-antifung186-244 aa

PF02439Adeno_E3_CR2261-277 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G080880	`PF01657`	Stress-antifung	46	142	2e-32	112.5
TkA06G080880	`PF01657`	Stress-antifung	186	244	2e-32	112.5
TkA06G080880	`PF02439`	Adeno_E3_CR2	261	277	0.14	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZU94`	Arabidopsis thaliana	sp\|Q9ZU94\|PDLP6_ARATH Plasmodesmata-located protein 6	58.700%	Swiss-Prot	High
`Q0WPN8`	Arabidopsis thaliana	sp\|Q0WPN8\|PDLP7_ARATH Plasmodesmata-located protein 7	56.700%	Swiss-Prot	High
`Q93YP0`	Arabidopsis thaliana	sp\|Q93YP0\|UEV1A_ARATH Ubiquitin-conjugating enzyme E2 variant 1A	74.800%	Swiss-Prot	High
`Q9CAB6`	Arabidopsis thaliana	sp\|Q9CAB6\|UEV1B_ARATH Ubiquitin-conjugating enzyme E2 variant 1B	73.000%	Swiss-Prot	High
`Q9SVD7`	Arabidopsis thaliana	sp\|Q9SVD7\|UEV1D_ARATH Ubiquitin-conjugating enzyme E2 variant 1D	77.300%	Swiss-Prot	High

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