LXL04_021182 | RubberDandelionOmics

Gene overview

LXL04_021182

Reference: OH-1004 Chr: Chr04 Coordinates: 123544164-123545823 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

948 bp · LXL04_021182|LXL04_021182|OH1004|cDNA

ATGCTTTTCTTATCGCTTTCTACGGCAAACTCCTTAATCTATATTGAATGCTCTCAACCCGACTTCACCATGATGACACCCTATGAGTCAAATATCAACTACCTATTCAATACCTTACTTGACTCCGCCTCTATCTCCAACTTCAACAAATCTATAATATGCTACCCTGAATCCTCACAAAGTGACGCTGTTTATGGTCTATTCCAATGCCGCAACGACCTTAGCTCTTCCAACTGCAAAGATTGCGTTGCCAACTCTTT...

CDS

Download CDS FASTA

948 bp · LXL04_021182|LXL04_021182|OH1004|CDS

ATGCTTTTCTTATCGCTTTCTACGGCAAACTCCTTAATCTATATTGAATGCTCTCAACCCGACTTCACCATGATGACACCCTATGAGTCAAATATCAACTACCTATTCAATACCTTACTTGACTCCGCCTCTATCTCCAACTTCAACAAATCTATAATATGCTACCCTGAATCCTCACAAAGTGACGCTGTTTATGGTCTATTCCAATGCCGCAACGACCTTAGCTCTTCCAACTGCAAAGATTGCGTTGCCAACTCTTT...

Protein

Download Protein FASTA

315 aa · LXL04_021182|LXL04_021182|OH1004|PROTEIN

MLFLSLSTANSLIYIECSQPDFTMMTPYESNINYLFNTLLDSASISNFNKSIICYPESSQSDAVYGLFQCRNDLSSSNCKDCVANSLSQLKTTCPTSTSGKIQLDGCFVKYNITSFFGVVDNMEVSKRCGPSVYNSDVLSRIDDALVLLTSANGQYFRGGGFGSVQGVAQCVQDLTINECEDCLLEAYRRLRSECETSSSADMYLGNCYIRYADQDNHDDNNTCDCNDDDNHRSKRKKKNRMPPSRINIKTFEEPESPEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021182`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021182

Location Chr04:123544164-123545823 (+)

Description Similar to PDLP6: Plasmodesmata-located protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At5g37660`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At1g70690`	Modulates cell-to-cell trafficking.	A plasmodesmata-localized protein mediates crosstalk between cell-to-cell communication and innate immunity in Arabidopsis.2011 · DOI: 10.1105/tpc.111.087742
`At3g60720`	Modulates cell-to-cell trafficking.	No verified direct reference in this release
`At3g22060`	Cysteine-rich repeat secretory protein 38.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021182 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009615 response to virus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051707 response to other organism Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0001872 (1->3)-beta-D-glucan binding Molecular Function

KEGG gene cross-reference

ath:AT1G70690

ath:AT2G01660

ath:AT3G22060

ath:AT3G60720

ath:AT5G37660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.457

Rank 1 · LXL04_021182 · OH-1004

Extracellular0.288

Rank 2 · LXL04_021182 · OH-1004

Endoplasmic reticulum0.120

Rank 3 · LXL04_021182 · OH-1004

Cytoplasm0.085

Rank 4 · LXL04_021182 · OH-1004

Nucleus0.044

Rank 5 · LXL04_021182 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung17-112 aa

PF01657.23Stress-antifung156-214 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021182	`PF01657.23`	Stress-antifung	17	112	2.3e-27	96.3
LXL04_021182	`PF01657.23`	Stress-antifung	156	214	2.3e-27	96.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZU94`	Arabidopsis thaliana	Plasmodesmata-located protein 6	43.578%	Swiss-Prot	moderate database homology
`Q0WPN8`	Arabidopsis thaliana	Plasmodesmata-located protein 7	45.327%	Swiss-Prot	moderate database homology
`Q8GUJ2`	Arabidopsis thaliana	Plasmodesmata-located protein 5	34.722%	Swiss-Prot	moderate database homology
`Q6NKQ9`	Arabidopsis thaliana	Plasmodesmata-located protein 8	37.736%	Swiss-Prot	moderate database homology
`Q9LRJ9`	Arabidopsis thaliana	Cysteine-rich repeat secretory protein 38	30.180%	Swiss-Prot	moderate database homology

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