TkA06G070370 | RubberDandelionOmics

Gene overview

TkA06G070370

Reference: TK1151 Chr: Chr06 Coordinates: 18841029-18848595 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1356 bp · TkA06G070370|TK1151|cDNA

ACTACATTCCATTACACCCTTCTTTTCGATGTTATAATTATAATTGAGTAGTACGTGAAGTTCAACGTGATTGTAAATGACGAAGTTTCCAATCGCCCATCACACAGATTTGATGGCACAACCATGATCCATCTATATATTTTAGAAAATCAAGCATTTTGCCTCCAAAAAAGTAATGGATCATGGCAATGGCAAGGTTTGTGTAACCGGTGCATCGGGTTTTCTAGCTTCCTGGCTCATCAAGCGACTCCTGTTATCTG...

CDS

Download CDS FASTA

975 bp · TkA06G070370|TK1151|CDS

ATGGATCATGGCAATGGCAAGGTTTGTGTAACCGGTGCATCGGGTTTTCTAGCTTCCTGGCTCATCAAGCGACTCCTGTTATCTGGTTATCATGTCGTTGGCACTGTTAGAGACCCTGCAAACGAAGCAAAAGTAGCTCACCTACGGAACCTACAAGGCGCAAAGGAGAGGCTCCGCCTAGTGAAGGCGGAGCTAACAGAGGAAGGAAGCTTCGATGATGCAATTATGGGATGTGAAGGCGTCTTCCACACAGCTTCCCC...

Protein

Download Protein FASTA

324 aa · TkA06G070370|TK1151|PROTEIN

MDHGNGKVCVTGASGFLASWLIKRLLLSGYHVVGTVRDPANEAKVAHLRNLQGAKERLRLVKAELTEEGSFDDAIMGCEGVFHTASPVLGQITNPREEILKPAVDGTLNVLRSCKKNPSLRRVVFTSSSSTVRVKDKFDPEKPVDESSWSSVEICEKYQIWYVLSKTMAEKAAWEFCNEKGINLVTVLPSFLVGPSLPPTLCSTASDILGLLQGETERFKWHGRMGYVHIDDVALCHILVYEHEDAEGRYLCSSSVIDND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G070370`
TK1151 ID	TkA06G070370
OH-1004 ID	LXL04_025277
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 93.642 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G070370

Location Chr06:18841029-18848595 (+)

Description Similar to TKPR1: Tetraketide alpha-pyrone reductase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35420`	Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine).	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for male fertility in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2008.02692.x Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.2010 · DOI: 10.1105/tpc.110.080036

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025277 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0048316 seed development Biological Process

GO:0080110 sporopollenin biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function

GO:0016621 cinnamoyl-CoA reductase activity Molecular Function

GO:0045552 dihydroflavanol 4-reductase activity Molecular Function

KEGG gene cross-reference

ath:AT4G35420

mdm:103450464

mtr:11427940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.796

Rank 1 · TkA06G070370 · TK1151

Nucleus0.294

Rank 2 · TkA06G070370 · TK1151

Endoplasmic reticulum0.066

Rank 3 · TkA06G070370 · TK1151

Cell membrane0.055

Rank 4 · TkA06G070370 · TK1151

Peroxisome0.051

Rank 5 · TkA06G070370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA6-86 aa

PF08659KR6-132 aa

PF01370Epimerase8-246 aa

PF00106adh_short8-76 aa

PF010733Beta_HSD10-186 aa

PF07993NAD_binding_410-198 aa

PF16363GDP_Man_Dehyd10-131 aa

PF13460NAD_binding_1012-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G070370	`PF05368`	NmrA	6	86	9.7e-06	26.1
TkA06G070370	`PF08659`	KR	6	132	0.00034	21.3
TkA06G070370	`PF01370`	Epimerase	8	246	7.6e-25	88.4
TkA06G070370	`PF00106`	adh_short	8	76	0.25	11.5
TkA06G070370	`PF01073`	3Beta_HSD	10	186	1.4e-14	54.6
TkA06G070370	`PF07993`	NAD_binding_4	10	198	2.8e-14	53.6
TkA06G070370	`PF16363`	GDP_Man_Dehyd	10	131	5.2e-11	43.3
TkA06G070370	`PF13460`	NAD_binding_10	12	139	9.3e-09	36.1
TkA06G070370	`PF20076`	DUF6472	236	272	0.23	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q500U8`	Arabidopsis thaliana	sp\|Q500U8\|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1	73.900%	Swiss-Prot	High

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