LXL04_025277 | RubberDandelionOmics

Gene overview

LXL04_025277

Reference: OH-1004 Chr: Chr05 Coordinates: 109056134-109058104 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_025277|LXL04_025277|OH1004|cDNA

ATGATATCCGGTAAGGACGCGATATTAGTAGCCCAGGTAGGAGCTTTTCAGAAAATGGACTTGGTAATGGATCATGGCAATGGCAAGGTTTGTGTAACCGGTGCATCGGGTTTTCTAGCTTCCTGGCTCATCAAGCGACTCCTGTTATCTGGTTATCATGTCGTTGGCACTGTTAGAGACCCTGCAAACGAAGCAAAAGTAGCTCACCTACGGAACCTACAAGGCGCAAAGGAGAGGCTCCGCCTAGTGAAGGCGGAGCT...

CDS

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1041 bp · LXL04_025277|LXL04_025277|OH1004|CDS

ATGATATCCGGTAAGGACGCGATATTAGTAGCCCAGGTAGGAGCTTTTCAGAAAATGGACTTGGTAATGGATCATGGCAATGGCAAGGTTTGTGTAACCGGTGCATCGGGTTTTCTAGCTTCCTGGCTCATCAAGCGACTCCTGTTATCTGGTTATCATGTCGTTGGCACTGTTAGAGACCCTGCAAACGAAGCAAAAGTAGCTCACCTACGGAACCTACAAGGCGCAAAGGAGAGGCTCCGCCTAGTGAAGGCGGAGCT...

Protein

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346 aa · LXL04_025277|LXL04_025277|OH1004|PROTEIN

MISGKDAILVAQVGAFQKMDLVMDHGNGKVCVTGASGFLASWLIKRLLLSGYHVVGTVRDPANEAKVAHLRNLQGAKERLRLVKAELTEEGSFDDAIMGCEGVFHTASPVLGQITNPREEILKPAVDGTLNVLRSCKKNPSLRRVVFTSSSSTVRVKDKFDPEKPVDESSWSSVEICEKYQIWYVLSKTMAEKAAWEFCNEKGINLVTVLPSFLVGPSLPPTLCSTASDILGLLQGETERFKWHGRMGYVHIDDVALCHI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025277`
TK1151 ID	TkA06G070370
OH-1004 ID	LXL04_025277
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 93.642 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025277

Location Chr05:109056134-109058104 (-)

Description Similar to TKPR1: Tetraketide alpha-pyrone reductase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35420`	Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine).	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for male fertility in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2008.02692.x Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.2010 · DOI: 10.1105/tpc.110.080036

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025277 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0048316 seed development Biological Process

GO:0080110 sporopollenin biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function

GO:0016621 cinnamoyl-CoA reductase activity Molecular Function

GO:0045552 dihydroflavanol 4-reductase activity Molecular Function

KEGG gene cross-reference

ath:AT4G35420

mdm:103450464

mtr:11427940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.750

Rank 1 · LXL04_025277 · OH-1004

Nucleus0.287

Rank 2 · LXL04_025277 · OH-1004

Endoplasmic reticulum0.076

Rank 3 · LXL04_025277 · OH-1004

Cell membrane0.063

Rank 4 · LXL04_025277 · OH-1004

Peroxisome0.059

Rank 5 · LXL04_025277 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370.28Epimerase30-268 aa

PF01073.263Beta_HSD32-208 aa

PF07993.19NAD_binding_432-220 aa

PF16363.12GDP_Man_Dehyd32-153 aa

PF13460.13NAD_binding_1034-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025277	`PF01370.28`	Epimerase	30	268	9.4e-25	88.1
LXL04_025277	`PF01073.26`	3Beta_HSD	32	208	1.6e-14	54.3
LXL04_025277	`PF07993.19`	NAD_binding_4	32	220	3.4e-14	53.4
LXL04_025277	`PF16363.12`	GDP_Man_Dehyd	32	153	6.4e-11	43.0
LXL04_025277	`PF13460.13`	NAD_binding_10	34	161	1e-08	36.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q500U8`	Arabidopsis thaliana	Tetraketide alpha-pyrone reductase 1	73.913%	Swiss-Prot	strong database homology

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