TkA06G068690 | RubberDandelionOmics

Gene overview

TkA06G068690

Reference: TK1151 Chr: Chr06 Coordinates: 18376902-18378761 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1659 bp · TkA06G068690|TK1151|cDNA

GGAAATTAGGGATACGTATAACTGTGCCCGATATTTTCCGACAAATACCGACACTTTATTTGTATGGATGAAACCTCCATCTGGTGATTTCTTTTCATTACCGTTTATGAAAAAATGGCAGACTGGTCTCAACTTCCGAGAGAGCTTCTTGATCTCATTTCCAAACACCTCAACTCGGAGACCGATCTTGTCCGTTTCCGATCTGTTTGCACCTCCTGGCGATCCTCCATACAAACTTTCACTTCCCGTTTTCCGATTCT...

CDS

Download CDS FASTA

1203 bp · TkA06G068690|TK1151|CDS

ATGGCAGACTGGTCTCAACTTCCGAGAGAGCTTCTTGATCTCATTTCCAAACACCTCAACTCGGAGACCGATCTTGTCCGTTTCCGATCTGTTTGCACCTCCTGGCGATCCTCCATACAAACTTTCACTTCCCGTTTTCCGATTCTCCCAAACACCGGAATCTCGGATTCGAACTGGGGTTTCTACCTCTCCAAACGGACCATCTTTCGTGTCGAATTACCTGATCCTGATTCACAGCAAACCAGCCTTCCATGGCTAAT...

Protein

Download Protein FASTA

400 aa · TkA06G068690|TK1151|PROTEIN

MADWSQLPRELLDLISKHLNSETDLVRFRSVCTSWRSSIQTFTSRFPILPNTGISDSNWGFYLSKRTIFRVELPDPDSQQTSLPWLIKVEKDNPQKTHLMNPLSGSEFISLLPNFPRSLDLLNFRVTELGQEYALQYISYRPNANSIGDSVTLYMEKVAFCSSGVDGFVLLTIHTSGRLAMLRNGERKWNIINDLPSPYDDVIFYKGEFYAVDITGRTVVLVMDSETTLKVVANSVFGGDKKFLLESDGELFMVDKFLSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G068690`
TK1151 ID	TkA06G068690
OH-1004 ID	LXL04_025304
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G068690

Location Chr06:18376902-18378761 (-)

Description Similar to SKIP23: F-box protein SKIP23

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17030`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At2g17036`	F-box protein At2g17036.	No verified direct reference in this release
`At2g17690`	Involved in heat stress response.	No verified direct reference in this release
`At5g24040`	Putative F-box/kelch-repeat protein At5g24040.	No verified direct reference in this release
`At1g44080`	Probable F-box protein At1g44080.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025304 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:2000083 negative regulation of L-ascorbic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G65770

ath:AT2G17030

ath:AT2G17036

ath:AT3G25750

ath:AT5G60060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.559

Rank 1 · TkA06G068690 · TK1151

Cytoplasm0.520

Rank 2 · TkA06G068690 · TK1151

Cell membrane0.098

Rank 3 · TkA06G068690 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA06G068690 · TK1151

Plastid0.030

Rank 5 · TkA06G068690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box4-42 aa

PF12937F-box-like4-39 aa

PF03478Beta-prop_KIB1-461-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G068690	`PF00646`	F-box	4	42	4.1e-07	30.4
TkA06G068690	`PF12937`	F-box-like	4	39	1.9e-06	28.2
TkA06G068690	`PF03478`	Beta-prop_KIB1-4	61	358	2.2e-52	178.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3EBZ2`	Arabidopsis thaliana	sp\|Q3EBZ2\|SKI23_ARATH F-box protein SKIP23	47.800%	Swiss-Prot	Medium
`Q6DR20`	Arabidopsis thaliana	sp\|Q6DR20\|FB110_ARATH F-box protein At2g17036	37.800%	Swiss-Prot	Medium
`Q3EBY8`	Arabidopsis thaliana	sp\|Q3EBY8\|FB111_ARATH F-box protein At2g17690	27.900%	Swiss-Prot	Low
`Q9FLV8`	Arabidopsis thaliana	sp\|Q9FLV8\|FK112_ARATH Putative F-box/kelch-repeat protein At5g24040	25.700%	Swiss-Prot	Low
`Q9C6X9`	Arabidopsis thaliana	sp\|Q9C6X9\|FB315_ARATH Probable F-box protein At1g44080	29.600%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card