Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1589 bp · TkA06G068600|TK1151|cDNA
TTATCGTTGCAGGGATATGAAGAAAACTGGAAAAACACAGAGGATGCGTGAACACCGTGAGCTTCAATGCAGATGGCGACATTCTCGTCTCTGGTTCAGATGACAAAATAGTTATCCTCTGGGACTGGGAAACCGGAAGTGTTAAACTCTCATTTAACTCTGGTCACAACCACAATATCTTCCAAGCAAAAATCATGCCAGGTACGGATGATAGAACAATCGTCACTTGTGCTGCTGATGGCCAGGTGAGACACGCAACA...
1455 bp · TkA06G068600|TK1151|CDS
ATGACTGACACGGCTGTAAAAAGTAGAGATTGGGATATGAAGAAAAGTAACAGAGCGAGCGTCGACACGGCGGTGGTTGATATCTGCCGCCGTGAAGTCGGACATCTTTCCACCAGGAAATTCGCCCACCGTCGCGCTGCTTCCGAGGACCTAGTCCTGCGACTCGATCTCGTAAGAAAGCTGGAAAAACACAGAGGATGCGTGAACACCGTGAGCTTCAATGCAGATGGCGACATTCTCGTCTCTGGTTCAGATGACAA...
Protein
Download Protein FASTA484 aa · TkA06G068600|TK1151|PROTEIN
MTDTAVKSRDWDMKKSNRASVDTAVVDICRREVGHLSTRKFAHRRAASEDLVLRLDLVRKLEKHRGCVNTVSFNADGDILVSGSDDKIVILWDWETGSVKLSFNSGHNHNIFQAKIMPGTDDRTIVTCAADGQVRHATILECGKVETKLLARHQGRAHKLATEPGSPHIFYTCGEDGLVQHFDLRTGKATELFICEPVRGRSFMQVVNLNAIAIDPQNPNLFVTAGSDEFTRLYDIRSHKSNPSSPFGQPVDHFCPKHLL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G068600 |
|---|---|
| TK1151 ID | TkA06G068600 |
| OH-1004 ID | LXL04_025308 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 97.727 / OH-1004 97.930Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G068600 |
|---|---|
| Location | Chr06:18348993-18355327 (-) |
| Description | Similar to DCAF8: DDB1- and CUL4-associated factor 8 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007283 spermatogenesis Biological Process GO:0007338 single fertilization Biological Process GO:0016567 protein ubiquitination Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component |
| KEGG gene cross-reference | hsa:50717 mmu:98193 pon:100174058 rno:364050 xla:431952 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24105Beta-prop_CAF1B_HIR152-104 aaPF24797Beta-prop_WDR35_TULP_N53-100 aaPF25047Beta-prop_TEP1_2nd54-192 aaPF23342WDR90_beta-prop_4th54-97 aaPF25175Beta-prop_WDR556-194 aaPF23381Beta-prop_IFT122_1st56-146 aaPF25168Beta-prop_WDR36-Utp21_2nd56-99 aaPF20426NBCH_WD4056-98 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G068600 | PF24105 | Beta-prop_CAF1B_HIR1 | 52 | 104 | 2.8e-14 | 53.6 |
| TkA06G068600 | PF24797 | Beta-prop_WDR35_TULP_N | 53 | 100 | 0.17 | 11.7 |
| TkA06G068600 | PF25047 | Beta-prop_TEP1_2nd | 54 | 192 | 5.5e-11 | 42.8 |
| TkA06G068600 | PF23342 | WDR90_beta-prop_4th | 54 | 97 | 0.011 | 15.6 |
| TkA06G068600 | PF25175 | Beta-prop_WDR5 | 56 | 194 | 1.9e-31 | 110.2 |
| TkA06G068600 | PF23381 | Beta-prop_IFT122_1st | 56 | 146 | 3e-24 | 86.5 |
| TkA06G068600 | PF25168 | Beta-prop_WDR36-Utp21_2nd | 56 | 99 | 4.4e-07 | 30.2 |
| TkA06G068600 | PF20426 | NBCH_WD40 | 56 | 98 | 2.4e-06 | 27.4 |
| TkA06G068600 | PF29037 | DSE1_N | 56 | 96 | 8.1e-05 | 22.6 |
| TkA06G068600 | PF23393 | Beta-prop_WDR90_POC16_2nd | 56 | 96 | 0.00015 | 21.8 |
| TkA06G068600 | PF23411 | Beta-prop_Vps41 | 56 | 104 | 0.034 | 14.1 |
| TkA06G068600 | PF24506 | KNTC1_N | 56 | 114 | 0.35 | 10.8 |
| TkA06G068600 | PF00400 | WD40 | 57 | 93 | 5.1e-27 | 93.8 |
| TkA06G068600 | PF25391 | WD40_Gbeta | 57 | 188 | 2.3e-09 | 37.5 |
| TkA06G068600 | PF23756 | Beta-prop_HPS5 | 57 | 110 | 1.7e-05 | 25.0 |
| TkA06G068600 | PF25173 | Beta-prop_WDR3_1st | 58 | 165 | 8.9e-23 | 81.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.