RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_025308
Reference: OH-1004 Chr: Chr05 Coordinates: 109511562-109513777 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1452 bp · LXL04_025308|LXL04_025308|OH1004|cDNA

ATGTATTTCAGACGTCCTTCTACTTCTAGGGATATGAAGAAAAGTAACAGAGCGAGCGTCGACACGGCGGTGGTTGATATCTGCCGCCGTGAAGTCGGACATCTTTCCACCAGGAAATTCGCCCACCGTCGCGCTGCTTCCGAGGACCTAGTCCTGCGACTCGATCTCGTAAGAAAGCTGGAAAAACACAGAGGATGCGTGAACACCGTGAGCTTCAATGCAGATGGCGACATTCTCGTCTCTGGTTCAGATGACAAAAT...

CDS

Download CDS FASTA

1452 bp · LXL04_025308|LXL04_025308|OH1004|CDS

ATGTATTTCAGACGTCCTTCTACTTCTAGGGATATGAAGAAAAGTAACAGAGCGAGCGTCGACACGGCGGTGGTTGATATCTGCCGCCGTGAAGTCGGACATCTTTCCACCAGGAAATTCGCCCACCGTCGCGCTGCTTCCGAGGACCTAGTCCTGCGACTCGATCTCGTAAGAAAGCTGGAAAAACACAGAGGATGCGTGAACACCGTGAGCTTCAATGCAGATGGCGACATTCTCGTCTCTGGTTCAGATGACAAAAT...

Protein

Download Protein FASTA

483 aa · LXL04_025308|LXL04_025308|OH1004|PROTEIN

MYFRRPSTSRDMKKSNRASVDTAVVDICRREVGHLSTRKFAHRRAASEDLVLRLDLVRKLEKHRGCVNTVSFNADGDILVSGSDDKIVILWDWETGSVKLSFNSGHNHNIFQAKIMPGTDDRTIVTCAADGQVRHATILECGKVETKLLARHQGRAHKLATEPGSPHIFYTCGEDGLVQHFDLRTGKATELFICEPVRGRSFMQVVNLNAIAIDPQNPNLFVTAGSDEFTRLYDIRSHKSNPSSPFGQPVDHFCPKHLLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_025308
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_025308
LocationChr05:109511562-109513777 (+)
DescriptionSimilar to DCAF8: DDB1- and CUL4-associated factor 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025308 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0007283 spermatogenesis Biological Process
GO:0007338 single fertilization Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
hsa:50717
mmu:98193
pon:100174058
rno:364050
xla:431952
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.623
Rank 1 · LXL04_025308 · OH-1004
Cytoplasm0.382
Rank 2 · LXL04_025308 · OH-1004
Mitochondrion0.053
Rank 3 · LXL04_025308 · OH-1004
Cell membrane0.045
Rank 4 · LXL04_025308 · OH-1004
Lysosome / Vacuole0.027
Rank 5 · LXL04_025308 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24105.2Beta-prop_CAF1B_HIR148-103 aa
PF25047.1Beta-prop_TEP1_2nd54-191 aa
PF25175.2Beta-prop_WDR555-193 aa
PF23381.2Beta-prop_IFT122_1st55-145 aa
PF00400.39WD4056-92 aa
PF25391.2WD40_Gbeta56-187 aa
PF24796.2WDR5557-134 aa
PF25171.2Beta-prop_WDR36-Utp21_1st57-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_025308PF24105.2Beta-prop_CAF1B_HIR1481032.4e-1453.8
LXL04_025308PF25047.1Beta-prop_TEP1_2nd541915.8e-1142.7
LXL04_025308PF25175.2Beta-prop_WDR5551931.9e-31110.2
LXL04_025308PF23381.2Beta-prop_IFT122_1st551453e-2486.5
LXL04_025308PF00400.39WD4056925.1e-2793.9
LXL04_025308PF25391.2WD40_Gbeta561872.5e-0937.3
LXL04_025308PF24796.2WDR55571341.3e-1351.4
LXL04_025308PF25171.2Beta-prop_WDR36-Utp21_1st571343.3e-1040.5
LXL04_025308PF25173.2Beta-prop_WDR3_1st581641.2e-2281.2
LXL04_025308PF24807.2WD40_CDC20-Fz592398.8e-1555.5
LXL04_025308PF25172.2Beta-prop_WDR3_2nd591345.2e-1349.6
LXL04_025308PF23409.2Beta-prop_EML591278.7e-1245.8
LXL04_025308PF24805.2EIF3I601352.5e-1040.7
LXL04_025308PF25174.2Beta-prop_THOC3631342.5e-2899.6
LXL04_025308PF24814.2WD40_Prp19672905.3e-2072.4
LXL04_025308PF25174.2Beta-prop_THOC31201902.5e-2899.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser