RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G068580
Reference: TK1151 Chr: Chr06 Coordinates: 18342621-18343703 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1083 bp · TkA06G068580|TK1151|cDNA

ATGGACTCCCTTACCCTCGTCTGCACCGTCTCCCTTCTCGCCGGCGGCCTTTACTGGTTCGTCTGCATCCTTGGGTCCGCCGAACAGAAAGGCAAGCACGCCGTTCAGCTCTCTGGAGGCTCAATCGAACGTGATAATGTTCAAGACAATTACAACGAGTACTGGTCTTTCTTCCGCCGCCCCAAAGAGATCGAGAAGGCTGAAAATGTCCCGGCTTTCGTCGACACCTTTTATAACCTCGTCACGGATATCTACGAATG...

CDS

Download CDS FASTA

1083 bp · TkA06G068580|TK1151|CDS

ATGGACTCCCTTACCCTCGTCTGCACCGTCTCCCTTCTCGCCGGCGGCCTTTACTGGTTCGTCTGCATCCTTGGGTCCGCCGAACAGAAAGGCAAGCACGCCGTTCAGCTCTCTGGAGGCTCAATCGAACGTGATAATGTTCAAGACAATTACAACGAGTACTGGTCTTTCTTCCGCCGCCCCAAAGAGATCGAGAAGGCTGAAAATGTCCCGGCTTTCGTCGACACCTTTTATAACCTCGTCACGGATATCTACGAATG...

Protein

Download Protein FASTA

360 aa · TkA06G068580|TK1151|PROTEIN

MDSLTLVCTVSLLAGGLYWFVCILGSAEQKGKHAVQLSGGSIERDNVQDNYNEYWSFFRRPKEIEKAENVPAFVDTFYNLVTDIYEWGWGQSFHFSPAIPGKSNLESTRIHEEMAVDLIGVKPGQKILDAGCGVGGPMRAIAAHSGCNVVGITINEYQVSRAKAHNKKAGLDKLCDVVCGNFLEMPFEDNSFDGAYSIEATCHAPNLEDVYGEIFRVLKPGSMYVSYEWVTTELYRGEDPEHVEVIQGIERGDALPGLRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G068580
TK1151 IDTkA06G068580
OH-1004 IDLXL04_025310
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G068580
LocationChr06:18342621-18343703 (-)
DescriptionSimilar to SMT2: 24-methylenesterol C-methyltransferase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g20330 Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol. No verified direct reference in this release
At1g76090 Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol. No verified direct reference in this release
At5g13710 Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol.
Sterol methyltransferase 1 controls the level of cholesterol in plants.2000 · DOI: 10.1105/tpc.12.6.853

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0136200 Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol. No verified direct reference in this release
Os07g0206700 Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025310 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006972 hyperosmotic response Biological Process
GO:0007389 pattern specification process Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009825 multidimensional cell growth Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0016126 sterol biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0032876 negative regulation of DNA endoreduplication Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
KEGG gene cross-reference
ath:AT1G20330
ath:AT1G76090
ath:AT5G13710
ddi:DDB_G0288907
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.679
Rank 1 · TkA06G068580 · TK1151
Mitochondrion0.164
Rank 2 · TkA06G068580 · TK1151
Cytoplasm0.112
Rank 3 · TkA06G068580 · TK1151
Cell membrane0.079
Rank 4 · TkA06G068580 · TK1151
Nucleus0.076
Rank 5 · TkA06G068580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02353CMAS74-281 aa
PF03848TehB105-174 aa
PF01209Ubie_methyltran108-230 aa
PF01135PCMT112-175 aa
PF08123DOT1116-194 aa
PF01728FtsJ120-165 aa
PF07021MetW121-165 aa
PF13847Methyltransf_31122-233 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G068580PF02353CMAS742814.1e-1453.3
TkA06G068580PF03848TehB1051740.1312.4
TkA06G068580PF01209Ubie_methyltran1082303.3e-1143.7
TkA06G068580PF01135PCMT1121750.01915.5
TkA06G068580PF08123DOT11161940.01116.0
TkA06G068580PF01728FtsJ1201650.001818.9
TkA06G068580PF07021MetW1211650.04714.0
TkA06G068580PF13847Methyltransf_311222333.3e-1763.3
TkA06G068580PF13489Methyltransf_231222772.6e-0937.7
TkA06G068580PF13679Methyltransf_321221760.05714.1
TkA06G068580PF05175MTS1221930.2711.5
TkA06G068580PF08003Methyltransf_91242030.02114.5
TkA06G068580PF09445Methyltransf_151251840.03214.5
TkA06G068580PF13649Methyltransf_251272214e-1969.8
TkA06G068580PF08241Methyltransf_111282246e-2382.0
TkA06G068580PF08242Methyltransf_121282231.2e-1042.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39227Arabidopsis thalianasp|Q39227|SMT2_ARATH 24-methylenesterol C-methyltransferase 281.100%Swiss-ProtHigh
Q94JS4Arabidopsis thalianasp|Q94JS4|SMT3B_ARATH 24-methylenesterol C-methyltransferase 379.100%Swiss-ProtHigh
Q9LM02Arabidopsis thalianasp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase40.700%Swiss-ProtMedium
O82427Oryza sativa subsp. japonicasp|O82427|SMT2_ORYSJ 24-methylenesterol C-methyltransferase 269.900%Swiss-ProtHigh
Q6ZIX2Oryza sativa subsp. japonicasp|Q6ZIX2|SMT1_ORYSJ Cycloartenol-C-24-methyltransferase 141.300%Swiss-ProtMedium

JBrowse

View in Genome Browser