TkA06G066560 | RubberDandelionOmics

Gene overview

TkA06G066560

Reference: TK1151 Chr: Chr06 Coordinates: 17859715-17864302 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2134 bp · TkA06G066560|TK1151|cDNA

AATGAATCTATGATGCACCTTCTTCGCTTGATGACGCCTGTCGGGGGCGCACTATGTTGACCGAAACCGATGGCCGCTCGATGTTTTCCAAATCTAATATCAAAAAAAGTAATTTAAAATAAAACAATTCCCCACGCCAAACACGAATAAACCCTTTTTGTTCTCACAACAGTCCCTTTCATCCTCCATTTATACTAGTCTAAGAGGGAGAAAGCGTAGCAGCAAGCACAGCAGATTCCAAGAGGTGTGGTTATTGCTCG...

CDS

Download CDS FASTA

1533 bp · TkA06G066560|TK1151|CDS

ATGTCGAACATAGACATTGAGGGGATCTTGAAGGACCTTCCAAACGATGGCCGTATTCCAAAAACAAAAATTGTGTGCACATTGGGACCCGCTTCTCGGTCAGTGGAGATGTGTGAGAAACTACTTCGGGCAGGCATGAACGTTGCCCGGTTCAACTTCTCGCACGGGACCCACGAGTATCATCAGGGGACTTTGAATAACCTTCGGATTGCCATGCATAATACTCAGATCTTGTGTGCAGTCATGCTTGATACCAAGGG...

Protein

Download Protein FASTA

510 aa · TkA06G066560|TK1151|PROTEIN

MSNIDIEGILKDLPNDGRIPKTKIVCTLGPASRSVEMCEKLLRAGMNVARFNFSHGTHEYHQGTLNNLRIAMHNTQILCAVMLDTKGPEIRTGFLKDEKPVQLKEGREITISTDYTIKGDEETISMSYKKLPIDLKPGNTILCADGTITLTVISCDPASGTVKCRCENTAMLGERKNVNLPGIVVDLPTLTEKDQEDILQWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVINFDEILRETDSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G066560`
TK1151 ID	TkA06G066560
OH-1004 ID	LXL04_025367
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G066560

Location Chr06:17859715-17864302 (-)

Description Similar to Pyruvate kinase, cytosolic isozyme

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26390`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025367 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0006950 response to stress Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G26390

gmx:547791

nta:107797877

sot:102601328

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.636

Rank 1 · TkA06G066560 · TK1151

Nucleus0.275

Rank 2 · TkA06G066560 · TK1151

Mitochondrion0.116

Rank 3 · TkA06G066560 · TK1151

Cell membrane0.113

Rank 4 · TkA06G066560 · TK1151

Endoplasmic reticulum0.057

Rank 5 · TkA06G066560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00224PK20-345 aa

PF03673UPF012883-133 aa

PF03673UPF0128214-266 aa

PF03328HpcH_HpaI224-261 aa

PF03328HpcH_HpaI318-360 aa

PF02887PK_C380-499 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G066560	`PF00224`	PK	20	345	1.3e-151	505.1
TkA06G066560	`PF03673`	UPF0128	83	133	0.14	12.4
TkA06G066560	`PF03673`	UPF0128	214	266	0.14	12.4
TkA06G066560	`PF03328`	HpcH_HpaI	224	261	0.011	15.8
TkA06G066560	`PF03328`	HpcH_HpaI	318	360	0.011	15.8
TkA06G066560	`PF02887`	PK_C	380	499	3.9e-22	79.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65595`	Arabidopsis thaliana	sp\|O65595\|KPYC_ARATH Probable pyruvate kinase, cytosolic isozyme	76.800%	Swiss-Prot	High

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