LXL04_025367 | RubberDandelionOmics

Gene overview

LXL04_025367

Reference: OH-1004 Chr: Chr05 Coordinates: 110490084-110492604 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1533 bp · LXL04_025367|LXL04_025367|OH1004|cDNA

ATGTCGAACATAGACATTGAGGGGATCTTGAAGGACCTTCCAAACGATGGCCGTATTCCAAAAACAAAAATTGTGTGCACATTGGGACCCGCTTCTCGGTCAGTGGAGATGTGTGAGAAACTACTTCGGGCAGGCATGAACGTTGCCCGGTTCAACTTCTCACACGGGACCCACGAGTATCATCAGGGGACTTTGAATAACCTTCGGATTGCCATGCATAATACTCAGATCTTGTGTGCAGTCATGCTTGATACCAAGGG...

CDS

Download CDS FASTA

1533 bp · LXL04_025367|LXL04_025367|OH1004|CDS

ATGTCGAACATAGACATTGAGGGGATCTTGAAGGACCTTCCAAACGATGGCCGTATTCCAAAAACAAAAATTGTGTGCACATTGGGACCCGCTTCTCGGTCAGTGGAGATGTGTGAGAAACTACTTCGGGCAGGCATGAACGTTGCCCGGTTCAACTTCTCACACGGGACCCACGAGTATCATCAGGGGACTTTGAATAACCTTCGGATTGCCATGCATAATACTCAGATCTTGTGTGCAGTCATGCTTGATACCAAGGG...

Protein

Download Protein FASTA

510 aa · LXL04_025367|LXL04_025367|OH1004|PROTEIN

MSNIDIEGILKDLPNDGRIPKTKIVCTLGPASRSVEMCEKLLRAGMNVARFNFSHGTHEYHQGTLNNLRIAMHNTQILCAVMLDTKGPEIRTGFLKDEKPVQLKEGREITISTDYTIKGDEETISMSYKKLPIDLKPGNTILCADGTITLTVISCDPASGTVKCRCENTAMLGERKNVNLPGIVVDLPTLTEKDQEDILQWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVINFDEILRETDSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025367`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025367

Location Chr05:110490084-110492604 (-)

Description Similar to Pyruvate kinase, cytosolic isozyme

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26390`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025367 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0006950 response to stress Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G26390

gmx:547791

nta:107797877

sot:102601328

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.636

Rank 1 · LXL04_025367 · OH-1004

Nucleus0.275

Rank 2 · LXL04_025367 · OH-1004

Mitochondrion0.116

Rank 3 · LXL04_025367 · OH-1004

Cell membrane0.113

Rank 4 · LXL04_025367 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_025367 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00224.28PK20-345 aa

PF02887.22PK_C380-499 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025367	`PF00224.28`	PK	20	345	1.3e-151	505.1
LXL04_025367	`PF02887.22`	PK_C	380	499	3.9e-22	79.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65595`	Arabidopsis thaliana	Probable pyruvate kinase, cytosolic isozyme	76.782%	Swiss-Prot	strong database homology

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