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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G061640
Reference: TK1151 Chr: Chr06 Coordinates: 16627198-16631611 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1591 bp · TkA06G061640|TK1151|cDNA

AAAACATTGGGGGTAAAATAGTCTTTTAGTGGCTTTGATCGGAGGGGTGATATTTCTTTCTTACAGCACTAGCGAGAAGAAAAACTCGATTCAAAATCGTAAAACCAAAGAAACAATTCATATATGAATTTTGATTTATAAATATCTAAATCTGATTAAAGGCATAAATCTCCGGCGATACCCCGTCCAATTACTTCCACATCCATCGATTTCTTCCTTTATTGGCCAATTTGTGAATGGAAGCGATCAGGAAACAGGCA...

CDS

Download CDS FASTA

1128 bp · TkA06G061640|TK1151|CDS

ATGGAAGCGATCAGGAAACAGGCAACGAAGCTCCGGGAACAGGTTGCCAGACAACAACAGGCGGTTTTCAAGCAGTTTGGTGGTGGAGGTTACGGAGGTTCAGATAATGTGGTAACAGATGAAGCAGAACTCATGCTTCACCAAAAACTCGAGAGACTATACATCTCCACACGTGCTGCCAAGCATTTTCAAAGGGACATTGTTCGCGGTGTTGAAGGTTACATAGTTACCGGTTCCAAACAAGTCGAAATAGGAAGTAA...

Protein

Download Protein FASTA

375 aa · TkA06G061640|TK1151|PROTEIN

MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELMLHQKLERLYISTRAAKHFQRDIVRGVEGYIVTGSKQVEIGSKLSEDSRKYGIENTCTSGNTLSRAAVNFSRARVQMEKERENLLKSFGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQVVEVSKRQAKVMDGNGSPELFARLEAAESKLQDLKSNMANLGKEAASAMAAVESQQQNMTLQRLISMIESERGYHEKVIQILDHLEGELKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G061640
TK1151 IDTkA06G061640
OH-1004 IDLXL04_025401
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 99.467 / OH-1004 91.198
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G061640
LocationChr06:16627198-16631611 (-)
DescriptionSimilar to SH3P2: SH3 domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34660 May regulate autophagosome formation or maturation.
A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis.2013 · DOI: 10.1105/tpc.113.118307
SH3 Domain-Containing Protein 2 Plays a Crucial Role at the Step of Membrane Tubulation during Cell Plate Formation.2017 · DOI: 10.1105/tpc.17.00108
At4g18060 May be involved in the recruitment of DRP2A to the accessory protein complex and in the negative regulation of its GTPase activity. No verified direct reference in this release
At1g31440 Lipid binding protein bound strongly to phosphatidic acid, phosphatidylinositol-4-phosphate and phosphatidylinositol-4,5- bisphosphate.
Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis.2001 · DOI: 10.1105/tpc.010279

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025401 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006897 endocytosis Biological Process
GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process
GO:0061024 membrane organization Biological Process
GO:0072319 vesicle uncoating Biological Process
GO:0072583 clathrin-dependent endocytosis Biological Process
GO:1903527 positive regulation of membrane tubulation Biological Process
GO:0000421 autophagosome membrane Cellular Component
GO:0002102 podosome Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005770 late endosome Cellular Component
KEGG gene cross-reference
ath:AT1G31440
ath:AT4G18060
ath:AT4G34660
gga:395202
mmu:20405
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687
Rank 1 · TkA06G061640 · TK1151
Cell membrane0.251
Rank 2 · TkA06G061640 · TK1151
Nucleus0.186
Rank 3 · TkA06G061640 · TK1151
Golgi apparatus0.123
Rank 4 · TkA06G061640 · TK1151
Lysosome / Vacuole0.083
Rank 5 · TkA06G061640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12761End33-83 aa
PF01322Cytochrom_C_23-23 aa
PF09392T3SS_needle_F3-32 aa
PF02050FliJ5-22 aa
PF14362DUF44077-21 aa
PF10400Vir_act_alpha_C9-20 aa
PF16746BAR_366-178 aa
PF23020PEX14-like_2nd108-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G061640PF12761End33830.2112.5
TkA06G061640PF01322Cytochrom_C_23231.210.9
TkA06G061640PF09392T3SS_needle_F3327.17.7
TkA06G061640PF02050FliJ5221.99.2
TkA06G061640PF14362DUF44077210.1112.5
TkA06G061640PF10400Vir_act_alpha_C9200.3112.5
TkA06G061640PF16746BAR_3661780.0003621.0
TkA06G061640PF23020PEX14-like_2nd1081430.1413.2
TkA06G061640PF02050FliJ1151811.99.2
TkA06G061640PF30816CEP152_CC11161721.37.9
TkA06G061640PF24615Spectrin_Anc-1_21211300.1613.0
TkA06G061640PF01322Cytochrom_C_21232251.210.9
TkA06G061640PF07267Nucleo_P871262980.1211.8
TkA06G061640PF10400Vir_act_alpha_C1491790.3112.5
TkA06G061640PF05010TACC_C1501800.2112.0
TkA06G061640PF14362DUF44071552660.1112.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VWF1Arabidopsis thalianasp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 269.600%Swiss-ProtHigh
Q8L7W0Arabidopsis thalianasp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 350.100%Swiss-ProtHigh
Q9C865Arabidopsis thalianasp|Q9C865|SH3P1_ARATH SH3 domain-containing protein 141.900%Swiss-ProtMedium

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