TkA06G058050 | RubberDandelionOmics

Gene overview

TkA06G058050

Reference: TK1151 Chr: Chr06 Coordinates: 15649788-15653263 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2537 bp · TkA06G058050|TK1151|cDNA

ATTGTGGTTCCTTTTGTAAGATATTTTTTCCCGATCGAACAGTAATTTTATTAAAATCCTAAAAATTGCTTTTTTCGTATCACACTCCATGTATGGCCATTCAGTGAATATCGGTGTTTGCTTTTTTCGTATCACACTCCATGTATCTAAACATATCAAAGAAAATTTTCTTTTCCTTTTTGATGGAAATAGTTGTCATCAACTATGGTTACCCGGAAAGCTCCCGTTCATCTTTTCTACATTTAAATTGTTTTTAAGGT...

CDS

Download CDS FASTA

1365 bp · TkA06G058050|TK1151|CDS

ATGAGTGGAGCAATCATATTTATCCAGGAAGATCTAAAAATCACCGAATTTCAAGAAGAAATTCTCGTGGGAATCTTGAGTGTCATCTCCCTATTGGGCAGTCTAGGCGGCGGCCGTGCCTCCGATGCACTTGGCCGGAAATGGACAATGGGTATAGCTGCAGTTATATTTCAAATCGGTGCACTTATAATGACATTAGCTCCTACTTTCCAAGTTCTGATGATCGGCCGCCTCCTCGCCGGAATTGGAATCGGATTTGG...

Protein

Download Protein FASTA

454 aa · TkA06G058050|TK1151|PROTEIN

MSGAIIFIQEDLKITEFQEEILVGILSVISLLGSLGGGRASDALGRKWTMGIAAVIFQIGALIMTLAPTFQVLMIGRLLAGIGIGFGVMIAPVYIAEISPTISRGSFTSFPEIFINIGILLGYVSNYAFSGLPSHINWRIMLAVGILPSVFIAFALCIIPESPRWLVMQNRVDEARSVLMKTNEIESEVEERLSEILKAAGIGTGSGVNPEEKAVWRELLSPSPSLRRMLITGFGIQCFQQITGIDATVYYSPEILQTAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G058050`
TK1151 ID	TkA06G058050
OH-1004 ID	LXL04_025465
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 85.178 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G058050

Location Chr06:15649788-15653263 (+)

Description Similar to PLT4: Probable polyol transporter 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20780`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At3g18830`	Plasma membrane broad-spectrum sugar-proton symporter.	Analysis of transport activity of Arabidopsis sugar alcohol permease homolog AtPLT5.2005 · DOI: 10.1074/jbc.m410831200 Arabidopsis POLYOL TRANSPORTER5, a new member of the monosaccharide transporter-like superfamily, mediates H+-Symport of numerous substrates, including myo-inositol, glycerol, and ribose.2005 · DOI: 10.1105/tpc.104.026641
`At2g16120`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At2g16130`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release
`At2g18480`	Plasma membrane sugar-proton symporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025465 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010311 lateral root formation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0005351 carbohydrate:proton symporter activity Molecular Function

GO:0005354 galactose transmembrane transporter activity Molecular Function

GO:0005365 myo-inositol transmembrane transporter activity Molecular Function

GO:0015145 monosaccharide transmembrane transporter activity Molecular Function

GO:0015148 D-xylose transmembrane transporter activity Molecular Function

GO:0015168 glycerol transmembrane transporter activity Molecular Function

GO:0015575 mannitol transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G16120

ath:AT2G16130

ath:AT2G18480

ath:AT2G20780

ath:AT3G18830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.347

Rank 1 · TkA06G058050 · TK1151

Cell membrane0.291

Rank 2 · TkA06G058050 · TK1151

Cytoplasm0.179

Rank 3 · TkA06G058050 · TK1151

Endoplasmic reticulum0.116

Rank 4 · TkA06G058050 · TK1151

Golgi apparatus0.113

Rank 5 · TkA06G058050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_14-377 aa

PF00083Sugar_tr19-429 aa

PF10981DUF278853-88 aa

PF26083TM_Tm6sf2265-317 aa

PF07690MFS_1343-425 aa

PF26083TM_Tm6sf2363-407 aa

PF10981DUF2788394-414 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G058050	`PF07690`	MFS_1	4	377	3.6e-32	112.4
TkA06G058050	`PF00083`	Sugar_tr	19	429	2.4e-105	353.8
TkA06G058050	`PF10981`	DUF2788	53	88	0.05	14.4
TkA06G058050	`PF26083`	TM_Tm6sf2	265	317	0.5	11.1
TkA06G058050	`PF07690`	MFS_1	343	425	3.6e-32	112.4
TkA06G058050	`PF26083`	TM_Tm6sf2	363	407	0.5	11.1
TkA06G058050	`PF10981`	DUF2788	394	414	0.05	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WUU6`	Arabidopsis thaliana	sp\|Q0WUU6\|PLT4_ARATH Probable polyol transporter 4	72.300%	Swiss-Prot	High
`Q8VZ80`	Arabidopsis thaliana	sp\|Q8VZ80\|PLT5_ARATH Polyol transporter 5	49.500%	Swiss-Prot	Medium
`Q9XIH7`	Arabidopsis thaliana	sp\|Q9XIH7\|PLT1_ARATH Putative polyol transporter 1	49.700%	Swiss-Prot	Medium
`Q9XIH6`	Arabidopsis thaliana	sp\|Q9XIH6\|PLT2_ARATH Putative polyol transporter 2	49.400%	Swiss-Prot	Medium
`Q9ZNS0`	Arabidopsis thaliana	sp\|Q9ZNS0\|PLT3_ARATH Probable polyol transporter 3	46.700%	Swiss-Prot	Medium

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