TkA06G056170 | RubberDandelionOmics

基因概览

TkA06G056170

当前版本: TK1151 染色体: Chr06 坐标: 15143196-15144898 链方向: + 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

1114 bp · TkA06G056170|TK1151|cDNA

TAGTTCAAAAATTATACTATTAAAAAATTAAACTCGATACAGAAATGGGTCCCTTTTCATCTCTTATCCTGAAAAAGCTGTCAGCCGGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGTAAAAGTTAACGAGAGGAGGGGAAAACAATAGCTGTAAAATTGTGCAGGGTTTTATAACACAGTTGCAGCTATAGGCTTGGCACTATACTGTGTGTACTATTTCATTTCTTGACTTTATCTTCTCCAATCCCTTCCCTAC...

CDS

下载 CDS FASTA

570 bp · TkA06G056170|TK1151|CDS

ATGGCGTCTTTGAGAATGATGGGGGTTCTGTCGTTTCTTCTGGTTTTTTCAAGCTTCTTCGTCCTCTTCGTTAACTCCGATGACGGGGGGACATTGTTGGAGATAAAAAAGTCGTTTAGAGATGTGAATAATGTGCTTTATGACTGGACTGCTTCACCTTCTTCCGACTACTGTTCATGGCGAGGTGTTTCTTGTGATAATGTCACCTTCAATGTCGTTGCCCTTAATCTTTCAGGCTTGAATCTTGATGGGGAACTGTC...

蛋白

下载蛋白 FASTA

189 aa · TkA06G056170|TK1151|PROTEIN

MASLRMMGVLSFLLVFSSFFVLFVNSDDGGTLLEIKKSFRDVNNVLYDWTASPSSDYCSWRGVSCDNVTFNVVALNLSGLNLDGELSPSIGELKGLLSIDLRANRVSGQIPDEIGDCSVLTNLDLSFNMLTGDIPFSISKLKQLELLILKNNQLIGPIPTTLSRIPNLKILDLAQNRLNGEIPRLIYLE

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`TkA06G056170`
TK1151 ID	TkA06G056170
OH-1004 ID	LXL04_017905
关系 / 置信度	跨参考版本对应关系 / 复杂对应关系
蛋白一致性 (%)	100.000
蛋白覆盖度 (%)	TK1151 55.026 / OH-1004 10.612 覆盖度与证据说明覆盖度为最高分比对片段的序列跨度占代表蛋白长度的比例。同源匹配不等同于功能验证。
版本	TK1151 / GWHBCHF00000000

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · TK1151

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID TkA06G056170

位置 Chr06:15143196-15144898 (+)

描述 Similar to ERECTA: LRR receptor-like serine/threonine-protein kinase ERECTA

拟南芥 / 水稻参考基因与文献

下载当前基因文献

拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At2g26330`	可能作为受体激酶，与 ERL1 和 ERL2 共同调节地上部株型及气孔分布。	KNAT1 and ERECTA regulate inflorescence architecture in Arabidopsis.2002 · DOI: 10.1105/tpc.010391 Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity.2003 · DOI: 10.1242/dev.00622 ERECTA, an LRR receptor-like kinase protein controlling development pleiotropically affects resistance to bacterial wilt.2003 · DOI: 10.1046/j.1365-313x.2003.01877.x Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation.2004 · DOI: 10.1242/dev.01028 ERECTA is required for protection against heat-stress in the AS1/ AS2 pathway to regulate adaxial-abaxial leaf polarity in Arabidopsis.2004 · DOI: 10.1007/s00425-004-1248-z ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina.2005 · DOI: 10.1111/j.1365-313x.2005.02440.x The ERECTA gene regulates plant transpiration efficiency in Arabidopsis.2005 · DOI: 10.1038/nature03835 Pedicel development in Arabidopsis thaliana: contribution of vascular positioning and the role of the BREVIPEDICELLUS and ERECTA genes.2005 · DOI: 10.1016/j.ydbio.2005.06.011 Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.2005 · DOI: 10.1104/pp.105.063495 ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048041 Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development.2007 · DOI: 10.1242/dev.004788 Genetics of microenvironmental canalization in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0701936104 A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations.2009 · DOI: 10.1093/jxb/erp084 Polymorphic genes of major effect: consequences for variation, selection and evolution in Arabidopsis thaliana.2009 · DOI: 10.1534/genetics.108.097030 The ERECTA Receptor-Like Kinase Regulates Cell Wall-Mediated Resistance to Pathogens in Arabidopsis thaliana.2009 · DOI: 10.1094/mpmi-22-8-0953 Direct interaction of ligand-receptor pairs specifying stomatal patterning.2012 · DOI: 10.1101/gad.179895.111 Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem.2012 · DOI: 10.1073/pnas.1117537109 Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases.2013 · DOI: 10.1093/jxb/ert196 A receptor-like protein acts as a specificity switch for the regulation of stomatal development.2017 · DOI: 10.1101/gad.297580.117 The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats.1996 · DOI: 10.1105/tpc.8.4.735
`At5g62230`	受体激酶，与 ER 和 ERL2 一起调节花序结构和器官形状以及气孔图案，包括密度和聚类。	Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation.2004 · DOI: 10.1242/dev.01028 Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development.2007 · DOI: 10.1242/dev.004788 Direct interaction of ligand-receptor pairs specifying stomatal patterning.2012 · DOI: 10.1101/gad.179895.111 Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases.2013 · DOI: 10.1093/jxb/ert196 A receptor-like protein acts as a specificity switch for the regulation of stomatal development.2017 · DOI: 10.1101/gad.297580.117

水稻

参考基因 ID	可能功能	对应论文 / DOI
`Os06g0203800`	参与调节耐热性的受体激酶。	暂无已核实直接文献
`Os02g0777400`	可能参与细胞增殖和细胞生长调控的受体激酶。	暂无已核实直接文献
`Os06g0130100`	参与盐碱干旱应激反应的受体激酶。	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants.2010 · DOI: 10.1111/j.1365-313x.2010.04146.x

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_017905 · GCA_047496595.1_OSU_TarKok_2.0。此处为经 ID 对照查得的 OH1004 注释；下方拟南芥/水稻同源表使用当前查询参考的独立蛋白比对。

GO 注释（OH1004 来源）

GO:0001558 regulation of cell growth 生物过程

GO:0009553 embryo sac development 生物过程

GO:0009664 plant-type cell wall organization 生物过程

GO:0009944 polarity specification of adaxial/abaxial axis 生物过程

GO:0009965 leaf morphogenesis 生物过程

GO:0010087 phloem or xylem histogenesis 生物过程

GO:0010103 stomatal complex morphogenesis 生物过程

GO:0010148 transpiration 生物过程

GO:0010286 heat acclimation 生物过程

GO:0030155 regulation of cell adhesion 生物过程

GO:0042659 regulation of cell fate specification 生物过程

GO:0042742 defense response to bacterium 生物过程

KEGG 基因交叉引用

ath:AT2G26330

ath:AT5G62230

dosa:Os02g0777400

dosa:Os06g0130100

dosa:Os06g0203800

osa:4340000

osa:4340427

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

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基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

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数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞膜0.702

排名 1 · TkA06G056170 · TK1151

内质网0.104

排名 2 · TkA06G056170 · TK1151

细胞质0.062

排名 3 · TkA06G056170 · TK1151

细胞外0.043

排名 4 · TkA06G056170 · TK1151

溶酶体／液泡0.042

排名 5 · TkA06G056170 · TK1151

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF08263LRRNT_226-66 aa

PF23211LRR_LRWD171-112 aa

PF13516LRR_672-79 aa

PF00560LRR_173-93 aa

PF25013LRR_Zer-174-87 aa

PF12799LRR_475-106 aa

PF23598LRR_1487-174 aa

PF13855LRR_889-130 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
TkA06G056170	`PF08263`	LRRNT_2	26	66	2.5e-12	47.6
TkA06G056170	`PF23211`	LRR_LRWD1	71	112	0.0064	16.9
TkA06G056170	`PF13516`	LRR_6	72	79	0.18	12.6
TkA06G056170	`PF00560`	LRR_1	73	93	2.2e-13	48.2
TkA06G056170	`PF25013`	LRR_Zer-1	74	87	0.0045	17.9
TkA06G056170	`PF12799`	LRR_4	75	106	3.2e-07	31.1
TkA06G056170	`PF23598`	LRR_14	87	174	1.8e-05	24.4
TkA06G056170	`PF13855`	LRR_8	89	130	4.1e-09	36.8
TkA06G056170	`PF24048`	LRR_NXF1-5	95	155	0.035	14.5
TkA06G056170	`PF00560`	LRR_1	96	117	2.2e-13	48.2
TkA06G056170	`PF13516`	LRR_6	96	107	0.18	12.6
TkA06G056170	`PF23211`	LRR_LRWD1	111	176	0.0064	16.9
TkA06G056170	`PF13516`	LRR_6	117	132	0.18	12.6
TkA06G056170	`PF25013`	LRR_Zer-1	119	177	0.0045	17.9
TkA06G056170	`PF00560`	LRR_1	120	141	2.2e-13	48.2
TkA06G056170	`PF13855`	LRR_8	120	178	4.1e-09	36.8

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

下载当前结果

蛋白	物种	描述	一致性	数据库	置信等级
`Q42371`	拟南芥	sp\|Q42371\|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA	72.100%	Swiss-Prot	中等置信
`C0LGW6`	拟南芥	sp\|C0LGW6\|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1	52.700%	Swiss-Prot	低置信
`Q69SP5`	水稻	sp\|Q69SP5\|EREC1_ORYSJ LRR receptor-like serine/threonine-protein kinase ER1	71.800%	Swiss-Prot	低置信
`I1Z695`	水稻	sp\|I1Z695\|EREC2_ORYSJ LRR receptor-like serine/threonine-protein kinase ER2	69.700%	Swiss-Prot	低置信
`Q658G7`	水稻	sp\|Q658G7\|SIK1_ORYSJ LRR receptor-like serine/threonine-protein kinase SIK1	52.700%	Swiss-Prot	低置信

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