TkA06G054630 | RubberDandelionOmics

Gene overview

TkA06G054630

Reference: TK1151 Chr: Chr06 Coordinates: 14781139-14784760 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2238 bp · TkA06G054630|TK1151|cDNA

GATAATATATTTTTTTAACTATTCAAAACTTAATTTATTTTATGGTTATTCATCTGAAGAAACATTTACCTGAGAAATACATGGTTTTGCCATTTATTCGCAACCAGACCATCAAATGTAACGTGTCCTGCTCACGACAAAAGGGGAAAGCCTTTGAGAAAAAGTTGGAAAGGTCAAAATCCATTTTCAACCGCTGTAACAGAACACTTCTATCTTCACTGCCATGTGAGAGACAGAGAGAGAGAGAGATCCACACAGAA...

CDS

Download CDS FASTA

1950 bp · TkA06G054630|TK1151|CDS

ATGGTTATTCATCTGAAGAAACATTTACCTGAGAAATACATGGTTTTGCCATTTATTCGCAACCAGACCATCAAATGTAACGTGTCCTGCTCACGACAAAAGGGGAAAGCCTTTGAGAAAAAGTTGGAAAGGTCAAAATCCATTTTCAACCGCTGTAACAGAACACTTCTATCTTCACTGCCATGTGAGAGACAGAGAGAGAGAGAGATCCACACAGAACTCAACATGACGCTTTTCGCTTATCTAAACAGAGCTCGTAA...

Protein

Download Protein FASTA

649 aa · TkA06G054630|TK1151|PROTEIN

MVIHLKKHLPEKYMVLPFIRNQTIKCNVSCSRQKGKAFEKKLERSKSIFNRCNRTLLSSLPCERQREREIHTELNMTLFAYLNRARNGFSSSSKLLVVFSLSSGGLVAYSESQSSTPPNNRELEELPKKKKVIVLGTGWASISFLKDLDISSYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKKKGDIHFWEAECTKIDAANKKVSCRSTIESNMGKKEFSLDYDYLVIATGAEVNTFNTPGVKEHCHFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G054630`
TK1151 ID	TkA06G054630
OH-1004 ID	LXL04_025522
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.700
Protein coverage (%)	TK1151 88.444 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G054630

Location Chr06:14781139-14784760 (-)

Description Similar to NDB1: External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28220`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).	Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200
`At4g21490`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane.	No verified direct reference in this release
`At4g05020`	Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).	Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025522 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component

GO:0003954 NADH dehydrogenase activity Molecular Function

GO:0003959 NADPH dehydrogenase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0009916 alternative oxidase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0120555 NADH dehydrogenase (ubiquinone) (non-electrogenic) activity Molecular Function

KEGG gene cross-reference

ath:AT4G05020

ath:AT4G21490

ath:AT4G28220

sot:102591773

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.924

Rank 1 · TkA06G054630 · TK1151

Cytoplasm0.081

Rank 2 · TkA06G054630 · TK1151

Nucleus0.062

Rank 3 · TkA06G054630 · TK1151

Cell membrane0.042

Rank 4 · TkA06G054630 · TK1151

Endoplasmic reticulum0.021

Rank 5 · TkA06G054630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992Pyr_redox_2130-450 aa

PF00070Pyr_redox131-164 aa

PF00070Pyr_redox297-380 aa

PF21650DnaG_cat_HB445-461 aa

PF13499EF-hand_7453-493 aa

PF13833EF-hand_8453-475 aa

PF13405EF-hand_6455-479 aa

PF13202EF-hand_5455-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G054630	`PF07992`	Pyr_redox_2	130	450	5.8e-49	167.8
TkA06G054630	`PF00070`	Pyr_redox	131	164	1.6e-06	29.2
TkA06G054630	`PF00070`	Pyr_redox	297	380	1.6e-06	29.2
TkA06G054630	`PF21650`	DnaG_cat_HB	445	461	0.25	12.1
TkA06G054630	`PF13499`	EF-hand_7	453	493	0.019	16.0
TkA06G054630	`PF13833`	EF-hand_8	453	475	0.09	13.3
TkA06G054630	`PF13405`	EF-hand_6	455	479	0.0025	18.1
TkA06G054630	`PF13202`	EF-hand_5	455	477	0.011	15.9
TkA06G054630	`PF00036`	EF-hand_1	455	479	0.019	15.2
TkA06G054630	`PF22366`	NDH2_C	584	645	2.5e-18	66.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q1JPL4`	Arabidopsis thaliana	sp\|Q1JPL4\|NDB1_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	66.300%	Swiss-Prot	High
`F4JJJ3`	Arabidopsis thaliana	sp\|F4JJJ3\|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial	63.500%	Swiss-Prot	High
`Q94BV7`	Arabidopsis thaliana	sp\|Q94BV7\|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial	62.300%	Swiss-Prot	High

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