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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G051970
Reference: TK1151 Chr: Chr06 Coordinates: 14121909-14124325 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2137 bp · TkA06G051970|TK1151|cDNA

TAAAAGTGATCTTTGTGGTAGTGTAGGTTTGGAATTGGGATGAAATTTGTGGTGAAAGAGGGTTAGAGTTTTGAAATTGTTGTTAGAAAAAGTTTTGTTGTGATATTTCGAAATTCGGGTACATGGTTGAAACACCACCATATATCGGGTTTGGACTCTAAATCGGGACTTTAAGTTGTGGACAGTAAGGTCGTGGTGAGGAAGTATCAAATGCGGAAATGTTAGGAGTAGAAGTATTAGAAATATTTTGGCTGTTTGAA...

CDS

Download CDS FASTA

1434 bp · TkA06G051970|TK1151|CDS

ATGATGATGGCGTTCCTTCGATTCTGTAAACCATCAAAAGGTTACATTTCGATTTCTAGGGCTTTGTTATACTCAACCGAAACAAGCGTCATCCAGGAAAAGCCAATTAACAAGAAGAATGACAATCTGTACAGGCGGATTTCACCCGTCGGGGATCCTAACGCTTCGATGATACCAATACTCGAGCAGTGGGAAAAAGAAGGTAAAACCGTCAAAATTGATCAGCTCATTGTCATAATCAAAAGCCTCCGGAAGTTCAA...

Protein

Download Protein FASTA

477 aa · TkA06G051970|TK1151|PROTEIN

MMMAFLRFCKPSKGYISISRALLYSTETSVIQEKPINKKNDNLYRRISPVGDPNASMIPILEQWEKEGKTVKIDQLIVIIKSLRKFNRYTHALQISEWMSKRRAKLHPAGFAVHLDLLSKVQGIEEAENYFNNTPDEVKNYQVYGALLNCYSNTKSLQKAESLAEKMKTLGMMTTLSYNSLLNLYKKTGNITKLEETYQEMLETGISCDKPTFYIRLSTYASLPDIEQMEKVLKKLEEHSGLTGDWNTYIIASGGYSKSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G051970
TK1151 IDTkA06G051970
OH-1004 IDLXL04_009930
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)42.300
Protein coverage (%)TK1151 96.226 / OH-1004 96.211
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G051970
LocationChr06:14121909-14124325 (-)
DescriptionSimilar to At2g20710: Pentatricopeptide repeat-containing protein At2g20710, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g20710 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial. No verified direct reference in this release
At1g02150 Pentatricopeptide repeat-containing protein At1g02150. No verified direct reference in this release
At4g02820 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial. No verified direct reference in this release
At1g28020 Putative pentatricopeptide repeat-containing protein At1g28020. No verified direct reference in this release
At1g43010 Putative pentatricopeptide repeat-containing protein At1g43010. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009930 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT2G20710
ath:AT4G02820
ath:AT4G21705
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.860
Rank 1 · TkA06G051970 · TK1151
Nucleus0.060
Rank 2 · TkA06G051970 · TK1151
Plastid0.051
Rank 3 · TkA06G051970 · TK1151
Cytoplasm0.044
Rank 4 · TkA06G051970 · TK1151
Cell membrane0.010
Rank 5 · TkA06G051970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2456-95 aa
PF24760TPR_IF140_C74-97 aa
PF13041PPR_279-103 aa
PF19189Mtf280-101 aa
PF29070MSC6_N97-199 aa
PF29144PGA45_N129-166 aa
PF24760TPR_IF140_C133-168 aa
PF14559TPR_19139-165 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G051970PF23276TPR_2456954.9e-0730.4
TkA06G051970PF24760TPR_IF140_C74970.005417.8
TkA06G051970PF13041PPR_2791034.6e-1762.6
TkA06G051970PF19189Mtf2801010.09813.1
TkA06G051970PF29070MSC6_N971991.4e-1144.8
TkA06G051970PF29144PGA45_N1291660.114.0
TkA06G051970PF24760TPR_IF140_C1331680.005417.8
TkA06G051970PF14559TPR_191391650.01516.3
TkA06G051970PF13181TPR_81421660.003718.0
TkA06G051970PF01535PPR1431718e-2070.3
TkA06G051970PF13041PPR_21431724.6e-1762.6
TkA06G051970PF17177PPR_long1431938.9e-0935.7
TkA06G051970PF13812PPR_31431713.3e-0627.8
TkA06G051970PF23276TPR_241442314.9e-0730.4
TkA06G051970PF12854PPR_11441687.6e-0523.1
TkA06G051970PF13424TPR_121441650.2812.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKU6Arabidopsis thalianasp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial40.300%Swiss-ProtMedium
Q8LPS6Arabidopsis thalianasp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g0215032.700%Swiss-ProtMedium
Q9SY07Arabidopsis thalianasp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial25.500%Swiss-ProtLow
Q9C7F1Arabidopsis thalianasp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g2802030.500%Swiss-ProtLow
Q9C545Arabidopsis thalianasp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g4301027.500%Swiss-ProtLow

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