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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G040130
Reference: TK1151 Chr: Chr06 Coordinates: 10818019-10819479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1461 bp · TkA06G040130|TK1151|cDNA

ATGCGGAAGAAAGTTCTGGTCTCCGTTCCCCGACTCATCTCAACATTCACTCCTACTACGTTCATCAGAAACTCATCAACCACTTCTTCTTTCTTCCCCCCACAATTGGACTCTTACTTCCAACTCAATCCTCGAGACAGGGTCTACACATATAACAGAGACATTCAGCGTTTGCTAAAATCAGGATCAATCGATTCTGCACTTAAACTGTTCGACGAAATGCCTACACGAGACGCAGTTACATGGAACATTATAATTTC...

CDS

Download CDS FASTA

1461 bp · TkA06G040130|TK1151|CDS

ATGCGGAAGAAAGTTCTGGTCTCCGTTCCCCGACTCATCTCAACATTCACTCCTACTACGTTCATCAGAAACTCATCAACCACTTCTTCTTTCTTCCCCCCACAATTGGACTCTTACTTCCAACTCAATCCTCGAGACAGGGTCTACACATATAACAGAGACATTCAGCGTTTGCTAAAATCAGGATCAATCGATTCTGCACTTAAACTGTTCGACGAAATGCCTACACGAGACGCAGTTACATGGAACATTATAATTTC...

Protein

Download Protein FASTA

486 aa · TkA06G040130|TK1151|PROTEIN

MRKKVLVSVPRLISTFTPTTFIRNSSTTSSFFPPQLDSYFQLNPRDRVYTYNRDIQRLLKSGSIDSALKLFDEMPTRDAVTWNIIISGHKSNGFSREALYFYSQMISQGFIETSSTFSTVLGVFSNERLYQQGLQVHNRAIVLGLSLNPYVGTALIDLYMNMNLINFAFRLFNDLPERNVATWNQLLRCFSEIGRSQKLELYFRMKREFIVPNPLTFCYLIRGFSNESLINNGKELHSYAIKLGFAESDLFVSNALVDFY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G040130
TK1151 IDTkA06G040130
OH-1004 IDLXL04_025841
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 53.173
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G040130
LocationChr06:10818019-10819479 (+)
DescriptionSimilar to At1g80170: Probable polygalacturonase At1g80170
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25970 Putative pentatricopeptide repeat-containing protein At3g25970. No verified direct reference in this release
At5g27110 Pentatricopeptide repeat-containing protein At5g27110. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At4g14850 Acts as a regulatory factor of isoprenoid biosynthesis.
Lovastatin insensitive 1, a Novel pentatricopeptide repeat protein, is a potential regulatory factor of isoprenoid biosynthesis in Arabidopsis.2007 · DOI: 10.1093/pcp/pcm005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025841 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005975 carbohydrate metabolic process Biological Process
GO:0009830 cell wall modification involved in abscission Biological Process
GO:0009835 fruit ripening Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0010047 fruit dehiscence Biological Process
GO:0071555 cell wall organization Biological Process
GO:0005576 extracellular region Cellular Component
GO:0009501 amyloplast Cellular Component
GO:0004650 polygalacturonase activity Molecular Function
KEGG gene cross-reference
ath:AT1G80170
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.679
Rank 1 · TkA06G040130 · TK1151
Plastid0.140
Rank 2 · TkA06G040130 · TK1151
Nucleus0.043
Rank 3 · TkA06G040130 · TK1151
Cytoplasm0.028
Rank 4 · TkA06G040130 · TK1151
Cell membrane0.005
Rank 5 · TkA06G040130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_248-77 aa
PF13812PPR_348-74 aa
PF17177PPR_long51-78 aa
PF30397MalM_C51-73 aa
PF01535PPR55-76 aa
PF29070MSC6_N55-126 aa
PF12854PPR_160-74 aa
PF23276TPR_2462-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G040130PF13041PPR_248771.4e-39134.7
TkA06G040130PF13812PPR_348745.1e-1040.0
TkA06G040130PF17177PPR_long51780.03914.0
TkA06G040130PF30397MalM_C51730.08313.7
TkA06G040130PF01535PPR55765.7e-34114.7
TkA06G040130PF29070MSC6_N551269.3e-0935.6
TkA06G040130PF12854PPR_160747.6e-1658.3
TkA06G040130PF23276TPR_24621040.0008120.0
TkA06G040130PF13041PPR_2781241.4e-39134.7
TkA06G040130PF12854PPR_1781057.6e-1658.3
TkA06G040130PF13812PPR_3781265.1e-1040.0
TkA06G040130PF18535Gal11_ABD179990.1213.2
TkA06G040130PF01535PPR801105.7e-34114.7
TkA06G040130PF17177PPR_long961980.03914.0
TkA06G040130PF01535PPR1151425.7e-34114.7
TkA06G040130PF18768RNPP_C1261438.1e-0522.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LU94Arabidopsis thalianasp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g2597030.600%Swiss-ProtMedium
O04659Arabidopsis thalianasp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g2711026.900%Swiss-ProtLow
Q9ZUW3Arabidopsis thalianasp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g2761027.100%Swiss-ProtLow
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151028.600%Swiss-ProtLow
Q0WSH6Arabidopsis thalianasp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g1485030.100%Swiss-ProtMedium

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