TkA06G034660 | RubberDandelionOmics

Gene overview

TkA06G034660

Reference: TK1151 Chr: Chr06 Coordinates: 9351636-9353659 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1472 bp · TkA06G034660|TK1151|cDNA

TTTGGGTGTTCGGGTTCAGGAGCTATCATTTGATAAAATATTGAAATTTGTGGAGCCAAAATAGATGAAATGCTGGTAATCCAGCTAAAAAAGAAATGAAGCAGCAATGAAGATCGATTGTATATATGTGCTTTAACGGGATATAGCAGGAATCAAGAATGGACTCAAATGGTAATAATGTTAGGCGAGTTGTAGAAGATAGGTTAAGCAGCTTGCCAGATGAGCTTATTCATAAGATCCTGTCTTGTTTTGACATAAAA...

CDS

Download CDS FASTA

921 bp · TkA06G034660|TK1151|CDS

ATGGACTCAAATGGTAATAATGTTAGGCGAGTTGTAGAAGATAGGTTAAGCAGCTTGCCAGATGAGCTTATTCATAAGATCCTGTCTTGTTTTGACATAAAATTTGCTGTTCAAACGTGTTTGCTGTCATTAAAATGGAAGCTTCTCTGGACATCAATCCCCTGTCTCAACTTCTCAACCGACCATTTTCGTGATTTACAAAAATTTGCCAAATTCGTGAAACATGTTCTGTCCCATCGCAACCATCAAATAGAAGTGTC...

Protein

Download Protein FASTA

306 aa · TkA06G034660|TK1151|PROTEIN

MDSNGNNVRRVVEDRLSSLPDELIHKILSCFDIKFAVQTCLLSLKWKLLWTSIPCLNFSTDHFRDLQKFAKFVKHVLSHRNHQIEVSSVKLNFRGAYNQVFVKKIADYAFSHNVQELSVVSLSSSKHFYPPCLFSSQSLTHFTLTGDYCQYHDITQTALDFPALTTLNLSDIKLRGDIFSKCVNLKNLTLKCFCFVGPEEVFDIITPRLSNLTLIKGIYLKSINVIAPELENLTIIECSIRNLNAPPGISSFCYTRPRGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G034660`
TK1151 ID	TkA06G034660
OH-1004 ID	LXL04_025895
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	76.900
Protein coverage (%)	TK1151 92.810 / OH-1004 38.070 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G034660

Location Chr06:9351636-9353659 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02910`	F-box/LRR-repeat protein At5g02910.	No verified direct reference in this release
`At3g49480`	Putative F-box/FBD/LRR-repeat protein At3g49480.	No verified direct reference in this release
`At2g29930`	F-box/LRR-repeat protein At2g29930.	No verified direct reference in this release
`At1g32020`	Putative F-box protein At1g32020.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025895 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G78760

ath:AT3G26922

ath:AT3G51530

ath:AT4G03220

ath:AT5G27750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.790

Rank 1 · TkA06G034660 · TK1151

Cytoplasm0.202

Rank 2 · TkA06G034660 · TK1151

Endoplasmic reticulum0.044

Rank 3 · TkA06G034660 · TK1151

Cell membrane0.043

Rank 4 · TkA06G034660 · TK1151

Plastid0.018

Rank 5 · TkA06G034660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box16-54 aa

PF12937F-box-like16-46 aa

PF24758LRR_At5g56370111-239 aa

PF12799LRR_4115-119 aa

PF12799LRR_4162-190 aa

PF00646F-box189-201 aa

PF12799LRR_4220-239 aa

PF00646F-box291-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G034660	`PF00646`	F-box	16	54	8.7e-05	23.0
TkA06G034660	`PF12937`	F-box-like	16	46	0.11	13.0
TkA06G034660	`PF24758`	LRR_At5g56370	111	239	1e-08	35.9
TkA06G034660	`PF12799`	LRR_4	115	119	0.022	15.7
TkA06G034660	`PF12799`	LRR_4	162	190	0.022	15.7
TkA06G034660	`PF00646`	F-box	189	201	8.7e-05	23.0
TkA06G034660	`PF12799`	LRR_4	220	239	0.022	15.7
TkA06G034660	`PF00646`	F-box	291	300	8.7e-05	23.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYZ4`	Arabidopsis thaliana	sp\|Q9LYZ4\|FBL79_ARATH F-box/LRR-repeat protein At5g02910	27.200%	Swiss-Prot	Low
`Q9CA04`	Arabidopsis thaliana	sp\|Q9CA04\|FDL45_ARATH Putative F-box/FBD/LRR-repeat protein At3g49480	51.000%	Swiss-Prot	Low
`Q84RK6`	Arabidopsis thaliana	sp\|Q84RK6\|FBL36_ARATH F-box/LRR-repeat protein At2g29930	27.400%	Swiss-Prot	Low
`Q9C6W9`	Arabidopsis thaliana	sp\|Q9C6W9\|FB28_ARATH Putative F-box protein At1g32020	27.200%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card