TkA06G030890 | RubberDandelionOmics

Gene overview

TkA06G030890

Reference: TK1151 Chr: Chr06 Coordinates: 8397668-8401928 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2058 bp · TkA06G030890|TK1151|cDNA

ATGCCAAAACCATATCTCATACATTACTATTTCATCGTCACACATTTAGTTTTTGCATCTATCATTTGTTCAAAGACCACATTTTGTGACCAAACTCCTTCTCCAAAGTTATGCCAAAACAAGTCATCAACTAGTGACTTGTTGACAACACTCGATTACCGGCTTATCCAATCAGTTGAAGGGGGAGGAACCATACAAGCAAACTTGGTTGTGGCTCAAGATGGCTCTGGAGACTTTACAAGAGTTACCAGAGCCATAAG...

CDS

Download CDS FASTA

2058 bp · TkA06G030890|TK1151|CDS

ATGCCAAAACCATATCTCATACATTACTATTTCATCGTCACACATTTAGTTTTTGCATCTATCATTTGTTCAAAGACCACATTTTGTGACCAAACTCCTTCTCCAAAGTTATGCCAAAACAAGTCATCAACTAGTGACTTGTTGACAACACTCGATTACCGGCTTATCCAATCAGTTGAAGGGGGAGGAACCATACAAGCAAACTTGGTTGTGGCTCAAGATGGCTCTGGAGACTTTACAAGAGTTACCAGAGCCATAAG...

Protein

Download Protein FASTA

685 aa · TkA06G030890|TK1151|PROTEIN

MPKPYLIHYYFIVTHLVFASIICSKTTFCDQTPSPKLCQNKSSTSDLLTTLDYRLIQSVEGGGTIQANLVVAQDGSGDFTRVTRAIRAFANRRIGTERYVIYVKSGVYKENIVITQSMTNLTLIGDGIDATVVTSDKNYNEGYTTGNTATVQIWASGFIAMGITFENTAGPTKQQAIALLSSSDLSAFYKCSFKGYQDTLCLLQYRQFYRECDIYGTIDFIFGDATAVLQNCNIYVRNPLPGQQNTITAQGRTDARSTTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G030890`
TK1151 ID	TkA06G030890
OH-1004 ID	LXL04_026034
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	80.500
Protein coverage (%)	TK1151 96.350 / OH-1004 96.992 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G030890

Location Chr06:8397668-8401928 (+)

Description Similar to PECS-2.1: Pectinesterase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g23200`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At2g45220`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At3g60730`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At4g00190`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026034 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0050829 defense response to Gram-negative bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G23200

ath:AT2G45220

cit:102577945

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.331

Rank 1 · TkA06G030890 · TK1151

Extracellular0.328

Rank 2 · TkA06G030890 · TK1151

Cytoplasm0.162

Rank 3 · TkA06G030890 · TK1151

Endoplasmic reticulum0.122

Rank 4 · TkA06G030890 · TK1151

Cell membrane0.072

Rank 5 · TkA06G030890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01095Pectinesterase68-360 aa

PF16968TadZ_N103-134 aa

PF01095Pectinesterase371-671 aa

PF16968TadZ_N406-435 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G030890	`PF01095`	Pectinesterase	68	360	5.2e-234	774.7
TkA06G030890	`PF16968`	TadZ_N	103	134	0.26	11.7
TkA06G030890	`PF01095`	Pectinesterase	371	671	5.2e-234	774.7
TkA06G030890	`PF16968`	TadZ_N	406	435	0.26	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49298`	Arabidopsis thaliana	sp\|O49298\|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6	54.100%	Swiss-Prot	Low
`O22149`	Arabidopsis thaliana	sp\|O22149\|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17	56.400%	Swiss-Prot	Low
`Q84R10`	Arabidopsis thaliana	sp\|Q84R10\|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36	51.600%	Swiss-Prot	Low
`O81320`	Arabidopsis thaliana	sp\|O81320\|PME38_ARATH Putative pectinesterase/pectinesterase inhibitor 38	51.300%	Swiss-Prot	Low

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