LXL04_026034 | RubberDandelionOmics

Gene overview

LXL04_026034

Reference: OH-1004 Chr: Chr05 Coordinates: 119955422-119960232 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2496 bp · LXL04_026034|LXL04_026034|OH1004|cDNA

ATGAAaatttcttcttcctctcacAACACTCCAAAATTTCTATTGTTACAATGTCAAGAAGAGAGTGGTATGCCGACCACATTTTGTGACCAAACTCCTTCTCCAAAGTTATGCCAAAACAAGTCATCAACTAGTGACTTGTTGACAACACTCGATTACCGGCTTATCCAATCAGTCGAAGGGGGAGGAACCATACAAGCAAACTTGGTTGTGGCTCAAGATGGCTCTGGAGACTTTACAAGAGTTACCAGAGCCATAAG...

CDS

Download CDS FASTA

2496 bp · LXL04_026034|LXL04_026034|OH1004|CDS

ATGAAAATTTCTTCTTCCTCTCACAACACTCCAAAATTTCTATTGTTACAATGTCAAGAAGAGAGTGGTATGCCGACCACATTTTGTGACCAAACTCCTTCTCCAAAGTTATGCCAAAACAAGTCATCAACTAGTGACTTGTTGACAACACTCGATTACCGGCTTATCCAATCAGTCGAAGGGGGAGGAACCATACAAGCAAACTTGGTTGTGGCTCAAGATGGCTCTGGAGACTTTACAAGAGTTACCAGAGCCATAAG...

Protein

Download Protein FASTA

831 aa · LXL04_026034|LXL04_026034|OH1004|PROTEIN

MKISSSSHNTPKFLLLQCQEESGMPTTFCDQTPSPKLCQNKSSTSDLLTTLDYRLIQSVEGGGTIQANLVVAQDGSGDFTRVTRAIRAFANRRIGTERYVIYVKSGVYKENIVITQSMTNLTLIGDGIDATVVTSDKNYNEGYTTGNTATVQIWASGFIAMGITFENTAGPTKQQAIALLSSSDLSAFYKCSFKGYQDTLCLLQYRQFYRECDIYGTIDFIFGDATAVLQNCNIYVRNPLPGQQNTITAQGRTDARSTTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026034`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026034

Location Chr05:119955422-119960232 (-)

Description Similar to PECS-2.1: Pectinesterase 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45220`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At1g23200`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g51490`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g51500`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026034 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0050829 defense response to Gram-negative bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G23200

ath:AT2G45220

cit:102577945

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.332

Rank 1 · LXL04_026034 · OH-1004

Lysosome / Vacuole0.312

Rank 2 · LXL04_026034 · OH-1004

Cytoplasm0.185

Rank 3 · LXL04_026034 · OH-1004

Endoplasmic reticulum0.130

Rank 4 · LXL04_026034 · OH-1004

Cell membrane0.076

Rank 5 · LXL04_026034 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01095.26Pectinesterase68-362 aa

PF04043.21PMEI410-468 aa

PF01095.26Pectinesterase517-817 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026034	`PF01095.26`	Pectinesterase	68	362	2.4e-234	775.8
LXL04_026034	`PF04043.21`	PMEI	410	468	2e-10	41.7
LXL04_026034	`PF01095.26`	Pectinesterase	517	817	2.4e-234	775.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22149`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 17	45.781%	Swiss-Prot	moderate database homology
`O49298`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 6	41.091%	Swiss-Prot	moderate database homology
`Q9FHN5`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 59	39.105%	Swiss-Prot	moderate database homology
`Q9FHN4`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 60	40.588%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card