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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G024910
Reference: TK1151 Chr: Chr06 Coordinates: 6772938-6776607 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2817 bp · TkA06G024910|TK1151|cDNA

AAATAAGCCGTTAGTGTGTTTCTTGTACGCATTCTACTACCACTCTCTCTCCTCTGCCTTATCAAAATTAGAATGGTGAATTGGTGAAATGAAATCCATGGAAATGGCGGCTTTGTTTTCCCTCCCATTTTAAAATCTGAAAACCGTGTTGAAAATCCAAATCCTTTCAACCACTTTCAACTTCCCCCAAAATTTTAATTACGCACAAAGTTTTCCCTCTCTTACTATCCACCAAATTCAAACCCTAATTCCTTCCTTTC...

CDS

Download CDS FASTA

1428 bp · TkA06G024910|TK1151|CDS

ATGCAGTTATGCAGTGCTTCACACACTCTGTGCTACTTGTTCAGGGTCTATACTCGTACACCTTTCCAACACCTTGTGATTGTAACAATGAAAGATTTCTGTTTGATTTGTGCTTTGAGGGAGCAAATTGAACTTTCACTAACATCAACTGGAAAAGTTGTCTCCCCATGGAAATTTGTCGACAACTTGAGCTATTTCTCATCATCTTTTCAAAGATATCAGCAAGAAGATGCTCATGAATTCCTGCAATGCTTTCTTGA...

Protein

Download Protein FASTA

475 aa · TkA06G024910|TK1151|PROTEIN

MQLCSASHTLCYLFRVYTRTPFQHLVIVTMKDFCLICALREQIELSLTSTGKVVSPWKFVDNLSYFSSSFQRYQQEDAHEFLQCFLDRLETSFTNLKLKDVAFSSQSNNLVKQVFGGRVISKLRCCNCNHISDTYEPSVDLSLEIDDANTLSTALESFTKVEHIGDEEMKFTCDNCKEKVSVDKQLMLDQTPPICAFHLKRFKNDGSYVEKIDKHVEFPLELDLQPYTCGNPTNNNVDLKYELYAVVVHAAYTSTCGHYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G024910
TK1151 IDTkA06G024910
OH-1004 IDLXL04_026145
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 88.421 / OH-1004 58.906
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G024910
LocationChr06:6772938-6776607 (+)
DescriptionSimilar to UBP21: Ubiquitin carboxyl-terminal hydrolase 21
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17895 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. No verified direct reference in this release
At5g46740 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. No verified direct reference in this release
At5g57990 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026145 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006508 proteolysis Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0016579 protein deubiquitination Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031647 regulation of protein stability Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004843 cysteine-type deubiquitinase activity Molecular Function
KEGG gene cross-reference
ath:AT4G17895
ath:AT5G46740
ath:AT5G57990
hsa:84132
rno:288482
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.612
Rank 1 · TkA06G024910 · TK1151
Cytoplasm0.410
Rank 2 · TkA06G024910 · TK1151
Mitochondrion0.062
Rank 3 · TkA06G024910 · TK1151
Cell membrane0.038
Rank 4 · TkA06G024910 · TK1151
Endoplasmic reticulum0.029
Rank 5 · TkA06G024910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13423UCH_123-278 aa
PF00443UCH32-296 aa
PF30124F10E9_2_M33-38 aa
PF13367PrsW-protease58-89 aa
PF13717Zn_ribbon_4121-131 aa
PF15499Peptidase_C98168-199 aa
PF13717Zn_ribbon_4169-185 aa
PF30124F10E9_2_M172-178 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G024910PF13423UCH_1232782.8e-2177.2
TkA06G024910PF00443UCH322965.1e-52177.7
TkA06G024910PF30124F10E9_2_M33385.27.6
TkA06G024910PF13367PrsW-protease58890.1212.6
TkA06G024910PF13717Zn_ribbon_41211310.1312.9
TkA06G024910PF15499Peptidase_C981681990.05713.8
TkA06G024910PF13717Zn_ribbon_41691850.1312.9
TkA06G024910PF30124F10E9_2_M1721785.27.6
TkA06G024910PF15499Peptidase_C982372950.05713.8
TkA06G024910PF13367PrsW-protease2442680.1212.6
TkA06G024910PF30124F10E9_2_M2562635.27.6
TkA06G024910PF13717Zn_ribbon_42702790.1312.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FPS7Arabidopsis thalianasp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 2051.100%Swiss-ProtMedium
Q9FIQ1Arabidopsis thalianasp|Q9FIQ1|UBP21_ARATH Ubiquitin carboxyl-terminal hydrolase 2151.200%Swiss-ProtMedium
Q9FPS4Arabidopsis thalianasp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 2335.700%Swiss-ProtMedium

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