TkA06G021480 | RubberDandelionOmics

Gene overview

TkA06G021480

Reference: TK1151 Chr: Chr06 Coordinates: 5865945-5868455 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1506 bp · TkA06G021480|TK1151|cDNA

CCGGGCTTCGTCTCACATTATACGATTCTCCACAATAACCTCCCTTTCCGGTTGTCGGCGTCCAGGAAAACGGCATCTCTCCAATAGGGCGGCTCGTTTCGTCCCTGCGGATCGAAGGTTTTTGCATCCGTGGATTTTGTTGAAGAGCAACTGTATTCCTTATGATAATTTCCTTGTCATTTTACCCTACAAAATGCCAACAATGAATGGGCGATTATTTCAATTTACGCGAATTTCATGAGATAGCGATTGTGATTATT...

CDS

Download CDS FASTA

642 bp · TkA06G021480|TK1151|CDS

ATGGGCTGTTTCTATTCTACTGAGGGTTTACGGGTTCCTTCCCGTGAAGACCCAAGGAAGCTTGCTTCTCAAACTTCTTTTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCTGTAGTTGATGATGGACTAATTAGCAAGGAAGAATTCCTACTAGCAATGTTCAAGAACAAAAGGAAAAAGAATCTGTTTGCAAACAGGATTTTTAGTCTTTTTGACGTTAAGCATAAGGGAGTCAT...

Protein

Download Protein FASTA

213 aa · TkA06G021480|TK1151|PROTEIN

MGCFYSTEGLRVPSREDPRKLASQTSFSVSEVEALFELFKSISSSVVDDGLISKEEFLLAMFKNKRKKNLFANRIFSLFDVKHKGVIDFGDFVRSLDVFHPKAPFEDKINFSFKLYDLDGTGFIERHEVKLMLVALLRESELRLADETLEMILDNTFLDADANRDGKIDKSEWRAYVTKNPSLLKIMTLPYLRDITTTFPSFVFNSQVEEEIT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G021480`
TK1151 ID	TkA06G021480
OH-1004 ID	LXL04_026207
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G021480

Location Chr06:5865945-5868455 (+)

Description Similar to CBL9: Calcineurin B-like protein 9

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47100`	Acts as a calcium sensor involved in abscisic acid (ABA) signaling and stress-induced ABA biosynthesis pathways.	The calcium sensor calcineurin B-like 9 modulates abscisic acid sensitivity and biosynthesis in Arabidopsis.2004 · DOI: 10.1105/tpc.021311 A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.2006 · DOI: 10.1016/j.cell.2006.06.011 Two calcineurin B-like calcium sensors, interacting with protein kinase CIPK23, regulate leaf transpiration and root potassium uptake in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03236.x The Calcineurin B-like calcium sensors CBL1 and CBL9 together with their interacting protein kinase CIPK26 regulate the Arabidopsis NADPH oxidase RBOHF.2013 · DOI: 10.1093/mp/sst009
`At4g17615`	Acts as a calcium sensor involved in the signaling pathway during growth and development and in response to abiotic stresses.	A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis.2002 · DOI: 10.1016/s1534-5807(02)00229-0 CBL1, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis.2003 · DOI: 10.1105/tpc.012393 The calcium sensor CBL1 integrates plant responses to abiotic stresses.2003 · DOI: 10.1046/j.1365-313x.2003.01892.x A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.2006 · DOI: 10.1016/j.cell.2006.06.011 Two calcineurin B-like calcium sensors, interacting with protein kinase CIPK23, regulate leaf transpiration and root potassium uptake in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03236.x The Calcineurin B-like calcium sensors CBL1 and CBL9 together with their interacting protein kinase CIPK26 regulate the Arabidopsis NADPH oxidase RBOHF.2013 · DOI: 10.1093/mp/sst009 A novel role for Arabidopsis CBL1 in affecting plant responses to glucose and gibberellin during germination and seedling development.2013 · DOI: 10.1371/journal.pone.0056412

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0564800`	Acts as a calcium sensor.	No verified direct reference in this release
`Os02g0291000`	Acts as a calcium sensor.	No verified direct reference in this release
`Os02g0291400`	Acts as a calcium sensor.	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses.2008 · DOI: 10.1016/j.gene.2008.02.011

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026207 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT4G17615

ath:AT5G47100

dosa:Os02g0291000

osa:107276173

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.461

Rank 1 · TkA06G021480 · TK1151

Cell membrane0.346

Rank 2 · TkA06G021480 · TK1151

Nucleus0.185

Rank 3 · TkA06G021480 · TK1151

Lysosome / Vacuole0.112

Rank 4 · TkA06G021480 · TK1151

Golgi apparatus0.096

Rank 5 · TkA06G021480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28604aRDF3-78 aa

PF13499EF-hand_725-61 aa

PF13833EF-hand_827-39 aa

PF12763EH36-93 aa

PF10591SPARC_Ca_bdg46-58 aa

PF13405EF-hand_648-61 aa

PF00036EF-hand_149-62 aa

PF13202EF-hand_549-57 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G021480	`PF28604`	aRDF	3	78	0.0033	17.3
TkA06G021480	`PF13499`	EF-hand_7	25	61	2.7e-13	50.8
TkA06G021480	`PF13833`	EF-hand_8	27	39	0.00081	19.8
TkA06G021480	`PF12763`	EH	36	93	0.0076	16.9
TkA06G021480	`PF10591`	SPARC_Ca_bdg	46	58	0.011	16.7
TkA06G021480	`PF13405`	EF-hand_6	48	61	1.4e-14	53.0
TkA06G021480	`PF00036`	EF-hand_1	49	62	2.2e-18	65.0
TkA06G021480	`PF13202`	EF-hand_5	49	57	7.2e-14	51.2
TkA06G021480	`PF23564`	EF-hand_FSTL1	49	69	0.00029	21.9
TkA06G021480	`PF13833`	EF-hand_8	49	95	0.00081	19.8
TkA06G021480	`PF30347`	RSA-1_C	51	131	0.061	14.2
TkA06G021480	`PF30624`	EF_SSP120	64	92	1.6e-05	26.2
TkA06G021480	`PF00036`	EF-hand_1	73	94	2.2e-18	65.0
TkA06G021480	`PF13405`	EF-hand_6	73	96	1.4e-14	53.0
TkA06G021480	`PF13499`	EF-hand_7	74	106	2.7e-13	50.8
TkA06G021480	`PF13202`	EF-hand_5	75	93	7.2e-14	51.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LTB8`	Arabidopsis thaliana	sp\|Q9LTB8\|CNBL9_ARATH Calcineurin B-like protein 9	75.700%	Swiss-Prot	High
`O81445`	Arabidopsis thaliana	sp\|O81445\|CNBL1_ARATH Calcineurin B-like protein 1	73.800%	Swiss-Prot	High
`Q7XC27`	Oryza sativa subsp. japonica	sp\|Q7XC27\|CNBL1_ORYSJ Calcineurin B-like protein 1	73.200%	Swiss-Prot	High
`Q3HRP0`	Oryza sativa subsp. japonica	sp\|Q3HRP0\|CNBL7_ORYSJ Calcineurin B-like protein 7	61.600%	Swiss-Prot	High
`Q3HRN9`	Oryza sativa subsp. japonica	sp\|Q3HRN9\|CNBL8_ORYSJ Calcineurin B-like protein 8	63.000%	Swiss-Prot	High

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