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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G017180
Reference: TK1151 Chr: Chr06 Coordinates: 4664610-4666857 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1696 bp · TkA06G017180|TK1151|cDNA

AGGGAATCCATAGAAAGCTTAACATATCTTACATTTGGCAGCATTCTCTCCACTCCGATATTCTCTTTTGTGAAAAATGACTAACAAGAATGGAGTTGAATGGAGTATCAGGATGAGTGATGGATCATCAATGGTATTGGAGCCAGAACACAAGAATAGAGCCATGAGAATATGGGATGGATTAAAGGGATTGTTTATGAGGTTTGTAATGAGAATATGGAACTTCTTCAAGAAAGCATGGGCTTTAGGAGTCGATGAAC...

CDS

Download CDS FASTA

1488 bp · TkA06G017180|TK1151|CDS

ATGACTAACAAGAATGGAGTTGAATGGAGTATCAGGATGAGTGATGGATCATCAATGGTATTGGAGCCAGAACACAAGAATAGAGCCATGAGAATATGGGATGGATTAAAGGGATTGTTTATGAGGTTTGTAATGAGAATATGGAACTTCTTCAAGAAAGCATGGGCTTTAGGAGTCGATGAACCTAGAAAATTCTTTCATTGTCTTAAAGTTGGCGTAGCTTTGATGGTTGTCTCATTGTTTTACTATATGAGACCTTT...

Protein

Download Protein FASTA

495 aa · TkA06G017180|TK1151|PROTEIN

MTNKNGVEWSIRMSDGSSMVLEPEHKNRAMRIWDGLKGLFMRFVMRIWNFFKKAWALGVDEPRKFFHCLKVGVALMVVSLFYYMRPLYDGVGGSAIWAVMTVVVVFEYTVGGTLYKCLNRICATFLAGFLALGIHWVASHSGHQLEPFIMGTSLFILASATTFSRFIPVVKARFDYGCTIFILTYSLISVSGYRVEHLLQVAHERLSTIIIGTCLCIITSMLVFPVWAGTELHLLIPRNMDKLAKSLDCCVADYFGHDDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G017180
TK1151 IDTkA06G017180
OH-1004 IDLXL04_026272
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G017180
LocationChr06:4664610-4666857 (+)
DescriptionSimilar to ALMT10: Aluminum-activated malate transporter 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g00910 Malate transporter. No verified direct reference in this release
At1g08440 Malate transporter. No verified direct reference in this release
At3g11680 Malate transporter. No verified direct reference in this release
At1g08430 Malate transporter critical for aluminum tolerance.
AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis.2006 · DOI: 10.1073/pnas.0602868103
Characterization of AtALMT1 expression in aluminum-inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis.2007 · DOI: 10.1104/pp.107.102335
Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance.2009 · DOI: 10.1111/j.1365-313x.2008.03696.x
STOP1 regulates multiple genes that protect arabidopsis from proton and aluminum toxicities.2009 · DOI: 10.1104/pp.108.134700

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026272 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0034220 monoatomic ion transmembrane transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
KEGG gene cross-reference
ath:AT1G08440
ath:AT2G27240
ath:AT3G11680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.869
Rank 1 · TkA06G017180 · TK1151
Endoplasmic reticulum0.093
Rank 2 · TkA06G017180 · TK1151
Cytoplasm0.061
Rank 3 · TkA06G017180 · TK1151
Lysosome / Vacuole0.035
Rank 4 · TkA06G017180 · TK1151
Nucleus0.030
Rank 5 · TkA06G017180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26165RESC744-62 aa
PF11744ALMT55-416 aa
PF13515FUSC_293-217 aa
PF04632FUSC96-233 aa
PF09843DUF2070104-227 aa
PF08514STAG135-164 aa
PF28190MMSYN1_0478143-224 aa
PF027373HCDH_N311-366 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G017180PF26165RESC744620.1213.5
TkA06G017180PF11744ALMT554166.7e-146487.6
TkA06G017180PF13515FUSC_2932179.3e-0936.2
TkA06G017180PF04632FUSC962330.0002420.6
TkA06G017180PF09843DUF20701042274.66.1
TkA06G017180PF08514STAG1351641.39.7
TkA06G017180PF28190MMSYN1_04781432241.39.4
TkA06G017180PF027373HCDH_N3113660.1812.4
TkA06G017180PF12205GIT1_C3333930.8810.6
TkA06G017180PF08514STAG3343871.39.7
TkA06G017180PF26165RESC73454010.1213.5
TkA06G017180PF11744ALMT4064636.7e-146487.6
TkA06G017180PF027373HCDH_N4194550.1812.4
TkA06G017180PF28190MMSYN1_04784224801.39.4
TkA06G017180PF08514STAG4464711.39.7
TkA06G017180PF12205GIT1_C4524810.8810.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O23086Arabidopsis thalianasp|O23086|ALMTA_ARATH Aluminum-activated malate transporter 1050.100%Swiss-ProtHigh
Q9SJE8Arabidopsis thalianasp|Q9SJE8|ALMT2_ARATH Aluminum-activated malate transporter 240.400%Swiss-ProtMedium
Q9SRM9Arabidopsis thalianasp|Q9SRM9|ALMT8_ARATH Aluminum-activated malate transporter 839.600%Swiss-ProtMedium
Q9SJE9Arabidopsis thalianasp|Q9SJE9|ALMT1_ARATH Aluminum-activated malate transporter 144.800%Swiss-ProtMedium

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