TkA06G012450 | RubberDandelionOmics

Gene overview

TkA06G012450

Reference: TK1151 Chr: Chr06 Coordinates: 3240286-3244059 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2769 bp · TkA06G012450|TK1151|cDNA

GTTTGGGCTACGGAAAACAGTATGAACTGAAGATTACATATATTATAGTTGTATCTAAGCCCATCAATTTCATCATCGTCATCGTCATAATCAGTCCAACATCTTTCTCTCTCTTCTCCTCCAAGAGAGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAGTCGGCTTTATACCACCGCTTCCCCTAAAGTCGTCTTCACTCAACTGTATCCCGCTGATTGCTACAACCAGTTGTTCTGTGGTCGATTTCACATGCGTA...

CDS

Download CDS FASTA

2265 bp · TkA06G012450|TK1151|CDS

ATGTATTTCTGGATATCTGGTTCATCGACAATGGAGTCCTGCAATTGTATCGAGCCACAATGGCCAGCCGATGAGCTTCTGATGAAATACCAGTACATATCAGATTTCTTCATAGCACTAGCTTATTTCTCCATCCCACTTGAGTTAATTTACTTCGTGAAAAAATCAGCAGTTTTTCCATATAGATGGGTGCTTGTTCAATTCGGTGCTTTCATTGTTCTATGTGGAGCCACCCATCTTATAAACCTATGGACCTTCAA...

Protein

Download Protein FASTA

754 aa · TkA06G012450|TK1151|PROTEIN

MYFWISGSSTMESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNAHTRTVAIVMTTAKVLTAAVSCATALMLVHIIPDLLSVKTRELFLKNKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLNRHTILKTTLVELGRTLGLEECALWMPTRSGLDLQLSYTLRHQNPVAFTVPIQSPVINQVFSTNRAVKISPTSPVARLRPASGKYMLGEVVAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G012450`
TK1151 ID	TkA06G012450
OH-1004 ID	LXL04_026423
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G012450`
Location	Chr06:3240286-3244059 (+)
Description	Similar to ETR1: Ethylene receptor 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026423` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0000155 phosphorelay sensor kinase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0038199 ethylene receptor activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051740 ethylene binding Molecular Function
KEGG gene cross-reference	mdm:103401284 sly:606298 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.292

Rank 1 · TkA06G012450 · TK1151

Cell membrane0.234

Rank 2 · TkA06G012450 · TK1151

Cytoplasm0.179

Rank 3 · TkA06G012450 · TK1151

Golgi apparatus0.169

Rank 4 · TkA06G012450 · TK1151

Nucleus0.115

Rank 5 · TkA06G012450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25487ETR1_N27-125 aa

PF00512HisKA154-167 aa

PF01590GAF169-317 aa

PF13492GAF_3172-253 aa

PF00072Response_reg192-201 aa

PF13492GAF_3280-319 aa

PF00512HisKA316-350 aa

PF24896Receiver_CRE1346-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G012450	`PF25487`	ETR1_N	27	125	1.7e-39	135.2
TkA06G012450	`PF00512`	HisKA	154	167	3.3e-19	69.4
TkA06G012450	`PF01590`	GAF	169	317	1e-14	55.9
TkA06G012450	`PF13492`	GAF_3	172	253	1.4e-05	26.2
TkA06G012450	`PF00072`	Response_reg	192	201	4.3e-13	50.1
TkA06G012450	`PF13492`	GAF_3	280	319	1.4e-05	26.2
TkA06G012450	`PF00512`	HisKA	316	350	3.3e-19	69.4
TkA06G012450	`PF24896`	Receiver_CRE1	346	346	0.015	16.2
TkA06G012450	`PF00512`	HisKA	353	418	3.3e-19	69.4
TkA06G012450	`PF01590`	GAF	428	453	1e-14	55.9
TkA06G012450	`PF02518`	HATPase_c	465	595	4.6e-24	85.7
TkA06G012450	`PF24896`	Receiver_CRE1	619	736	0.015	16.2
TkA06G012450	`PF00072`	Response_reg	626	737	4.3e-13	50.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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