LXL04_026423 | RubberDandelionOmics

Gene overview

LXL04_026423

Reference: OH-1004 Chr: Chr05 Coordinates: 126089885-126092830 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2265 bp · LXL04_026423|LXL04_026423|OH1004|cDNA

ATGTATTTCTGGATATCTGGTTCATCGACAATGGAGTCCTGCAATTGTATCGAGCCACAATGGCCAGCCGATGAGCTTCTGATGAAATACCAGTACATATCAGATTTCTTCATAGCACTAGCTTATTTCTCCATCCCACTTGAGTTAATTTACTTCGTGAAAAAATCAGCAGTTTTTCCATATAGATGGGTGCTTGTTCAATTCGGTGCTTTCATTGTTCTATGTGGAGCCACCCATCTTATAAACCTATGGACCTTCAA...

CDS

Download CDS FASTA

2265 bp · LXL04_026423|LXL04_026423|OH1004|CDS

ATGTATTTCTGGATATCTGGTTCATCGACAATGGAGTCCTGCAATTGTATCGAGCCACAATGGCCAGCCGATGAGCTTCTGATGAAATACCAGTACATATCAGATTTCTTCATAGCACTAGCTTATTTCTCCATCCCACTTGAGTTAATTTACTTCGTGAAAAAATCAGCAGTTTTTCCATATAGATGGGTGCTTGTTCAATTCGGTGCTTTCATTGTTCTATGTGGAGCCACCCATCTTATAAACCTATGGACCTTCAA...

Protein

Download Protein FASTA

754 aa · LXL04_026423|LXL04_026423|OH1004|PROTEIN

MYFWISGSSTMESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNAHTRTVAIVMTTAKVLTAAVSCATALMLVHIIPDLLSVKTRELFLKNKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLNRHTILKTTLVELGRTLGLEECALWMPTRSGLDLQLSYTLRHQNPVAFTVPIQSPVINQVFSTNRAVKISPTSPVARLRPASGKYMLGEVVAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026423`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_026423`
Location	Chr05:126089885-126092830 (+)
Description	Similar to ETR1: Ethylene receptor 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026423` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0000155 phosphorelay sensor kinase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0038199 ethylene receptor activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051740 ethylene binding Molecular Function
KEGG gene cross-reference	mdm:103401284 sly:606298 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.292

Rank 1 · LXL04_026423 · OH-1004

Cell membrane0.234

Rank 2 · LXL04_026423 · OH-1004

Cytoplasm0.179

Rank 3 · LXL04_026423 · OH-1004

Golgi apparatus0.169

Rank 4 · LXL04_026423 · OH-1004

Nucleus0.115

Rank 5 · LXL04_026423 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25487.2ETR1_N27-125 aa

PF01590.33GAF169-317 aa

PF00512.32HisKA353-418 aa

PF02518.32HATPase_c465-595 aa

PF00072.31Response_reg626-737 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026423	`PF25487.2`	ETR1_N	27	125	1.7e-39	135.2
LXL04_026423	`PF01590.33`	GAF	169	317	1e-14	55.9
LXL04_026423	`PF00512.32`	HisKA	353	418	3.3e-19	69.4
LXL04_026423	`PF02518.32`	HATPase_c	465	595	4.6e-24	85.7
LXL04_026423	`PF00072.31`	Response_reg	626	737	4.3e-13	50.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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