TkA06G012210 | RubberDandelionOmics

Gene overview

TkA06G012210

Reference: TK1151 Chr: Chr06 Coordinates: 3185067-3185543 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

477 bp · TkA06G012210|TK1151|cDNA

ATAATACTTTTCTACAATCTTATCTACACAATCTTCCTCTCTTTACTTCCAAAGAATCTCAGACATTACCTCTCTTCTTCTTACAATCCACACCAACAACAGATCCACGAAGTCGCCACTACCACCACGACCACCACTTCCCCATCACTCCCACCTCCATCAACACCGCGATCTTCTCGCATGGATCGCGACCAGCTCCAACGCATCTTCCAGATGTTCGACAAAAACGGAGATGCAAGAATCACCAAGGAAGAACTCAA...

CDS

Download CDS FASTA

477 bp · TkA06G012210|TK1151|CDS

ATAATACTTTTCTACAATCTTATCTACACAATCTTCCTCTCTTTACTTCCAAAGAATCTCAGACATTACCTCTCTTCTTCTTACAATCCACACCAACAACAGATCCACGAAGTCGCCACTACCACCACGACCACCACTTCCCCATCACTCCCACCTCCATCAACACCGCGATCTTCTCGCATGGATCGCGACCAGCTCCAACGCATCTTCCAGATGTTCGACAAAAACGGAGATGCAAGAATCACCAAGGAAGAACTCAA...

Protein

Download Protein FASTA

158 aa · TkA06G012210|TK1151|PROTEIN

IILFYNLIYTIFLSLLPKNLRHYLSSSYNPHQQQIHEVATTTTTTTSPSLPPPSTPRSSRMDRDQLQRIFQMFDKNGDARITKEELNDSLENMGIFIPDSDLTQMIKNIDENHDGCVDIDDFGTLYKSIMDDRENEEDVMEAFNVFDQNRDGFITVEE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G012210`
TK1151 ID	TkA06G012210
OH-1004 ID	LXL04_023266
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.600
Protein coverage (%)	TK1151 92.405 / OH-1004 66.667 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G012210

Location Chr06:3185067-3185543 (+)

Description Similar to CML5: Calmodulin-like protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07490`	Potential calcium sensor.	No verified direct reference in this release
`At2g43290`	Potential calcium sensor.	No verified direct reference in this release
`At4g12860`	Potential calcium sensor that is required for pollen tube attraction for ovule fertilization.	No verified direct reference in this release
`At1g05990`	Potential calcium sensor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0228800`	Potential calcium sensor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023266 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0005509 calcium ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G05990

ath:AT2G43290

ath:AT3G07490

ath:AT3G59440

dosa:Os12g0228800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.251

Rank 1 · TkA06G012210 · TK1151

Cytoplasm0.216

Rank 2 · TkA06G012210 · TK1151

Nucleus0.195

Rank 3 · TkA06G012210 · TK1151

Lysosome / Vacuole0.190

Rank 4 · TkA06G012210 · TK1151

Cell membrane0.164

Rank 5 · TkA06G012210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24151ArlX9-95 aa

PF26110GAPS4b_N19-27 aa

PF10591SPARC_Ca_bdg57-123 aa

PF23564EF-hand_FSTL160-92 aa

PF22592FCaBP_EF-hand61-91 aa

PF12763EH61-131 aa

PF30624EF_SSP12063-85 aa

PF13499EF-hand_764-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G012210	`PF24151`	ArlX	9	95	0.11	12.7
TkA06G012210	`PF26110`	GAPS4b_N	19	27	0.034	14.6
TkA06G012210	`PF10591`	SPARC_Ca_bdg	57	123	0.1	13.6
TkA06G012210	`PF23564`	EF-hand_FSTL1	60	92	0.00025	22.1
TkA06G012210	`PF22592`	FCaBP_EF-hand	61	91	0.012	16.6
TkA06G012210	`PF12763`	EH	61	131	0.033	14.8
TkA06G012210	`PF30624`	EF_SSP120	63	85	7.4e-05	24.0
TkA06G012210	`PF13499`	EF-hand_7	64	126	8.1e-18	65.3
TkA06G012210	`PF13833`	EF-hand_8	64	91	4.4e-06	27.1
TkA06G012210	`PF05042`	Caleosin	64	100	0.12	13.0
TkA06G012210	`PF13405`	EF-hand_6	65	94	5.7e-16	57.4
TkA06G012210	`PF00036`	EF-hand_1	66	89	6.6e-17	60.4
TkA06G012210	`PF24548`	EF_EFCAB10_C	66	109	5.3e-05	23.5
TkA06G012210	`PF13202`	EF-hand_5	67	87	3.6e-13	49.1
TkA06G012210	`PF17959`	EF-hand_14	68	114	0.0018	19.3
TkA06G012210	`PF14658`	EF-hand_9	68	123	0.009	17.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRR7`	Arabidopsis thaliana	sp\|Q9SRR7\|CML3_ARATH Calmodulin-like protein 3	66.300%	Swiss-Prot	Medium
`O22845`	Arabidopsis thaliana	sp\|O22845\|CML5_ARATH Calmodulin-like protein 5	50.700%	Swiss-Prot	High
`Q9SU00`	Arabidopsis thaliana	sp\|Q9SU00\|CML2_ARATH Calmodulin-like protein 2	55.100%	Swiss-Prot	Medium
`Q9LNE7`	Arabidopsis thaliana	sp\|Q9LNE7\|CML7_ARATH Calmodulin-like protein 7	58.600%	Swiss-Prot	Medium
`Q2QVI1`	Oryza sativa subsp. japonica	sp\|Q2QVI1\|CML28_ORYSJ Probable calcium-binding protein CML28	48.700%	Swiss-Prot	Medium

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