Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1063 bp · TkA06G008610|TK1151|cDNA
TTTGCAATTGCATAGTATTTAATGATATTAAACATATAGGGTTTAAAATATACAACCCATATTATATAATCAAATTAAATAATATTCTCGCTTACAGTCTCCAAAAAGTCTGCTAATTTTCAATTTTTCATACTACACTCCCACGGTGTCCGACGTGATGGCCGACTCTCAGCAGGTCCGATCCACCACCGACACCAGTAACAACCTCCCTGTTGCAATCGTCCATTGCCTCCCCAGCTACAAGTTCTCCCTCGCGTGGA...
906 bp · TkA06G008610|TK1151|CDS
ATGGCCGACTCTCAGCAGGTCCGATCCACCACCGACACCAGTAACAACCTCCCTGTTGCAATCGTCCATTGCCTCCCCAGCTACAAGTTCTCCCTCGCGTGGACTAAAGAAATCGTCAACACAATCGAGCCTTCAGATCCCTTATATCCAATCCACAGTCCATCTGCTCGGGCCGTGATCGTCATCGGTCTTACCCCGCTCAAATCGGAGCATTTGGACCAGTATCCATCCGTTGAATGCGTTTTTGGAACATCCGCCGG...
Protein
Download Protein FASTA301 aa · TkA06G008610|TK1151|PROTEIN
MADSQQVRSTTDTSNNLPVAIVHCLPSYKFSLAWTKEIVNTIEPSDPLYPIHSPSARAVIVIGLTPLKSEHLDQYPSVECVFGTSAGVDHIDLVECRRRNIRVASAGDAFSEDVADYAIGLLIDVLRQVSASDRYVRSGLWPVKGDYPLGNKVGGKRVGIVGLGRIGTLVAKRLEPFGCTIGYTSRTKKPQEKTRHVIDHDVMKALGKRGIIVNIGRGALVDEKELVKLLVGGELGGAGLDVFENEPKVPKELFTMDNVV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G008610 |
|---|---|
| TK1151 ID | TkA06G008610 |
| OH-1004 ID | LXL04_026499 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 87.000 |
| Protein coverage (%) | TK1151 96.013 / OH-1004 38.182Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G008610 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:2167693-2169233 (+) | |||||||||
| Description | Similar to EXPA7: Expansin-A7 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009826 unidimensional cell growth Biological Process GO:0009828 plant-type cell wall loosening Biological Process GO:0009853 photorespiration Biological Process GO:0009854 oxidative photosynthetic carbon pathway Biological Process GO:0048767 root hair elongation Biological Process GO:0005576 extracellular region Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component GO:0016618 hydroxypyruvate reductase [NAD(P)H] activity Molecular Function GO:0030267 glyoxylate reductase (NADPH) activity Molecular Function GO:0051287 NAD binding Molecular Function GO:0120509 hydroxypyruvate reductase (NADPH) activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G12550 ath:AT1G12560 ath:AT1G62980 osa:107277540 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF003892-Hacid_dh55-298 aaPF028262-Hacid_dh_C119-192 aaPF00899ThiF153-179 aaPF028262-Hacid_dh_C191-266 aaPF00899ThiF248-282 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G008610 | PF00389 | 2-Hacid_dh | 55 | 298 | 9.8e-19 | 68.1 |
| TkA06G008610 | PF02826 | 2-Hacid_dh_C | 119 | 192 | 1.4e-39 | 136.0 |
| TkA06G008610 | PF00899 | ThiF | 153 | 179 | 0.19 | 11.6 |
| TkA06G008610 | PF02826 | 2-Hacid_dh_C | 191 | 266 | 1.4e-39 | 136.0 |
| TkA06G008610 | PF00899 | ThiF | 248 | 282 | 0.19 | 11.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.