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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G000140
Reference: TK1151 Chr: Chr06 Coordinates: 14643-18633 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2329 bp · TkA06G000140|TK1151|cDNA

CGGCGGTCTAGGCGGGCACTAATCGGGCTAATCGGGTGTAGGCGGGCACTAATTGACCTAAACCTAAAACATTTTCCCTTTTCAGCGATCGCCGCTACACCACCTTCCTTCGAATTCCATCAGGCAAAAACGAACCCCGCTCCACCACCTCCGCTACACCAGTCCACCTGCGCCACCTCCACCTGCCGCTGCTCGATCACGTACGTCTTTCCATCGATTTCCTCCACAGGCGCTGCAACCTCCTTCGTGTTTCCCAGGCG...

CDS

Download CDS FASTA

1431 bp · TkA06G000140|TK1151|CDS

ATGGTTCGAAGCTTGAAAAACCCAAAGAAAGCTAAGCGGAAGAGCAAGGGTTCAAAGAAAGGAGAAGGTTCGTCATTATCAAATGCAATACCTTCAATGCCAGCGAAGGTGTGGCAACCAGGTGTTGATGCTTTAGAGGAAGGAGAAGAGCTTCAATGTGATCCTTCAGCTTATAATTCTCTTCACGCCTTCCACATCGGTTGGCCCTGCTTAAGCTTTGACATCGTGCGAGATTCACTTGGACTAGTTCGCACAGAATA...

Protein

Download Protein FASTA

476 aa · TkA06G000140|TK1151|PROTEIN

MVRSLKNPKKAKRKSKGSKKGEGSSLSNAIPSMPAKVWQPGVDALEEGEELQCDPSAYNSLHAFHIGWPCLSFDIVRDSLGLVRTEYPHTVYCVTGTQANNAPNSIGIFKISNISGKRRELVPTKTSNADTDMDSDSSDSDEDEEIENGPKAPVFQVRKVFHEGCVNRIRAMTQKPHICATWGDTGHVQIWDFSSHLNALAESEPNISKDASTVSTQTPLVQFTGHKDEGYAIDWSALVPGRLVSGDCKNNIHLWEPSSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G000140
TK1151 IDTkA06G000140
OH-1004 IDLXL04_027868
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)27.600
Protein coverage (%)TK1151 63.445 / OH-1004 60.511
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G000140
LocationChr06:14643-18633 (+)
DescriptionSimilar to MSI4: WD-40 repeat-containing protein MSI4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g19540 Probable substrate receptor of CRL4 E3 ligase complexes acting as negative regulators of thermotolerance by disturbing the action of HSP90-1 and by preventing the expression of heat-inducible genes (e.g. HSP14.7, HSP21, At2g03020 and WRKY28).
Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.2014 · DOI: 10.14348/molcells.2014.0224

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027868 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006260 DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006335 DNA replication-dependent chromatin assembly Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009627 systemic acquired resistance Biological Process
GO:0009908 flower development Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010629 negative regulation of gene expression Biological Process
KEGG gene cross-reference
ath:AT2G16780
ath:AT2G19520
ath:AT4G29730
ddi:DDB_G0282529
mmu:19646
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.782
Rank 1 · TkA06G000140 · TK1151
Cytoplasm0.364
Rank 2 · TkA06G000140 · TK1151
Cell membrane0.038
Rank 3 · TkA06G000140 · TK1151
Lysosome / Vacuole0.028
Rank 4 · TkA06G000140 · TK1151
Endoplasmic reticulum0.026
Rank 5 · TkA06G000140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12265CAF1C_H4-bd49-114 aa
PF02911Formyl_trans_C58-90 aa
PF08574Iwr197-149 aa
PF30151PAC11107-196 aa
PF23798Beta-prop_SPT8125-192 aa
PF25178Beta-prop_WDR41156-205 aa
PF23609Beta-prop_EIPR1157-194 aa
PF24796WDR55159-195 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G000140PF12265CAF1C_H4-bd491141.9e-1351.2
TkA06G000140PF02911Formyl_trans_C58900.1313.2
TkA06G000140PF08574Iwr1971490.2313.2
TkA06G000140PF30151PAC111071960.0003620.2
TkA06G000140PF23798Beta-prop_SPT81251920.00118.7
TkA06G000140PF25178Beta-prop_WDR411562050.01514.8
TkA06G000140PF23609Beta-prop_EIPR11571947.9e-1555.8
TkA06G000140PF24796WDR551591959.7e-1451.8
TkA06G000140PF25171Beta-prop_WDR36-Utp21_1st1611964.5e-0936.8
TkA06G000140PF23409Beta-prop_EML1612148.3e-0729.5
TkA06G000140PF25174Beta-prop_THOC31621966.1e-2691.8
TkA06G000140PF00400WD401621929.9e-1761.4
TkA06G000140PF24105Beta-prop_CAF1B_HIR11622583.3e-1556.7
TkA06G000140PF25172Beta-prop_WDR3_2nd1621951.1e-0628.8
TkA06G000140PF23756Beta-prop_HPS51621940.002717.7
TkA06G000140PF23098Beta-prop_NOL10_N1661980.0001621.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUN8Arabidopsis thalianasp|Q9ZUN8|HTD1_ARATH Protein HEAT STRESS TOLERANT DWD 165.600%Swiss-ProtHigh

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