TkA05G465040 | RubberDandelionOmics

Gene overview

TkA05G465040

Reference: TK1151 Chr: Chr05 Coordinates: 116541840-116544569 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2144 bp · TkA05G465040|TK1151|cDNA

TAGGTTAACCCCCATACCAACTCTTCCCATATCAAAACACAACATAATTTCTTGATTACCCTAAATTCACCTAAATTGGTCAAAAATTATCCTCAACTTGTACTCGCACCACCTTTCATTTCTGCTCACCAAATCCCTTTCTCATGCACGCCAAGCAACACCCTCATATAACACATGACTCCCCTCCCTCCTAAAAACATCTTCAGCATGTTCAACACCACCATGACCACCTCCTCTCCTACCCTCTCTCCGGCCACCGC...

CDS

Download CDS FASTA

855 bp · TkA05G465040|TK1151|CDS

ATGCTACCTTCATTGGTTCTCGGTCTTCGTGTCGACATGTACGAATGGATTTCACAGGTTCTTTGTAGGCAAAACGGAACTTTCACATTCCGGGGTCCATGGTTTACAAATCTCAACTGTATCGTCACTTCCGACCCCCGTAATCTCGAACACCTTCTCAAAACAAGGTTCCAAGCCTACCCAAAAGGCCCGTATTTCCGGCACGCACTCCGGGATCTTCTCGGTAACGGAATCTTTAATGCCGACGATGACATTTGGCA...

Protein

Download Protein FASTA

284 aa · TkA05G465040|TK1151|PROTEIN

MLPSLVLGLRVDMYEWISQVLCRQNGTFTFRGPWFTNLNCIVTSDPRNLEHLLKTRFQAYPKGPYFRHALRDLLGNGIFNADDDIWQRQRKTASIEFHSSKFRNLTTESLLELVHRRLLPVLRESLDRSDEIDLQDILLRLTFDNVCMIAFGVDPGCLSPGLPEIPFAQAFEAATEATLLRFVTPTLMWKIMRHFNIGSEKTLKDSIKGVDSFADEVIRTRKKEISLQTDGEKQRSDLLTIFMGHKDEEGKPFSDKFLRD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G465040`
TK1151 ID	TkA05G465040
OH-1004 ID	LXL04_022405
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 98.944 / OH-1004 50.906 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G465040

Location Chr05:116541840-116544569 (-)

Description Similar to CYP86B1: Cytochrome P450 86B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23190`	Involved in very long chain fatty acids (VLCFA) omega- hydroxylation.	CYP86B1 is required for very long chain omega-hydroxyacid and alpha, omega -dicarboxylic acid synthesis in root and seed suberin polyester.2009 · DOI: 10.1104/pp.109.141408 Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis.2009 · DOI: 10.1104/pp.109.144907
`At1g63710`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335
`At1g01600`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335 Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester.2009 · DOI: 10.1073/pnas.0909090106
`At4g00360`	Catalyzes the omega-hydroxylation of various fatty acids (FA).	Arabidopsis CYP86A2 represses Pseudomonas syringae type III genes and is required for cuticle development.2004 · DOI: 10.1038/sj.emboj.7600290 Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.2007 · DOI: 10.1002/prot.21335

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022405 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0035336 long-chain fatty-acyl-CoA metabolic process Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ag:AAZ39642

ath:AT1G01600

ath:AT1G63710

ath:AT4G00360

ath:AT5G23190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.913

Rank 1 · TkA05G465040 · TK1151

Cytoplasm0.048

Rank 2 · TkA05G465040 · TK1151

Golgi apparatus0.034

Rank 3 · TkA05G465040 · TK1151

Cell membrane0.034

Rank 4 · TkA05G465040 · TK1151

Lysosome / Vacuole0.027

Rank 5 · TkA05G465040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45037-282 aa

PF24993GNC1_N91-138 aa

PF24993GNC1_N170-193 aa

PF22523DUF6999176-200 aa

PF24993GNC1_N211-231 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G465040	`PF00067`	p450	37	282	2e-29	103.4
TkA05G465040	`PF24993`	GNC1_N	91	138	0.18	12.3
TkA05G465040	`PF24993`	GNC1_N	170	193	0.18	12.3
TkA05G465040	`PF22523`	DUF6999	176	200	0.039	13.7
TkA05G465040	`PF24993`	GNC1_N	211	231	0.18	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMY1`	Arabidopsis thaliana	sp\|Q9FMY1\|C86B1_ARATH Cytochrome P450 86B1	74.400%	Swiss-Prot	High
`Q9CAD6`	Arabidopsis thaliana	sp\|Q9CAD6\|C86A7_ARATH Cytochrome P450 86A7	46.300%	Swiss-Prot	Medium
`Q9LMM1`	Arabidopsis thaliana	sp\|Q9LMM1\|C86A4_ARATH Cytochrome P450 86A4	47.000%	Swiss-Prot	Medium
`O23066`	Arabidopsis thaliana	sp\|O23066\|C86A2_ARATH Cytochrome P450 86A2	44.400%	Swiss-Prot	Medium

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