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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G464210
Reference: TK1151 Chr: Chr05 Coordinates: 116277323-116279635 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1920 bp · TkA05G464210|TK1151|cDNA

ATGTACAGAGCTATTCTCCGAGAAGAAAACGATTCAATTTGTGGCTTCTTCTGCATTCATGGTGCCTCCAGCTGTACAACTTACCTCTTTGCCGTTCTTCTAAACCCATATGATCCAATTGTCATTTGGTCAGCCAATCGAGACTATCCGGTAAGTTATGGTGCAATACTGAATTTCACTGCGGCCGGAGAATTGGTGTTACAGGATGTCAATGGAAGCGTAGTTTGGACTACAAACACCAGAAGGAAATCTGTTGCTAG...

CDS

Download CDS FASTA

1920 bp · TkA05G464210|TK1151|CDS

ATGTACAGAGCTATTCTCCGAGAAGAAAACGATTCAATTTGTGGCTTCTTCTGCATTCATGGTGCCTCCAGCTGTACAACTTACCTCTTTGCCGTTCTTCTAAACCCATATGATCCAATTGTCATTTGGTCAGCCAATCGAGACTATCCGGTAAGTTATGGTGCAATACTGAATTTCACTGCGGCCGGAGAATTGGTGTTACAGGATGTCAATGGAAGCGTAGTTTGGACTACAAACACCAGAAGGAAATCTGTTGCTAG...

Protein

Download Protein FASTA

639 aa · TkA05G464210|TK1151|PROTEIN

MYRAILREENDSICGFFCIHGASSCTTYLFAVLLNPYDPIVIWSANRDYPVSYGAILNFTAAGELVLQDVNGSVVWTTNTRRKSVASMKVDNGNLVLYDIHNSIVWQSFDHPTDCLVPGQKLIQGQKLIPSVSPTNRNSICSGNQQCSCPRSIDSFRAVNDSDPVMGCSQVTPLTCNATQNHTFIELKNVKYFTYNVDIEDVDPGSCRQACLNKCSCKAALFEYGPSQSHGNCYLPSELFTMTKVNNGKSNPSSNIPQSH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G464210
TK1151 IDTkA05G464210
OH-1004 IDLXL04_022384
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)81.800
Protein coverage (%)TK1151 100.000 / OH-1004 91.470
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G464210
LocationChr05:116277323-116279635 (-)
DescriptionSimilar to SD25: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32300 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5. No verified direct reference in this release
At2g19130 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130. No verified direct reference in this release
At1g34300 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300. No verified direct reference in this release
At5g24080 G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080. No verified direct reference in this release
At4g00340 Serine/threonine-protein kinase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022384 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048544 recognition of pollen Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005516 calmodulin binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030246 carbohydrate binding Molecular Function
GO:0031625 ubiquitin protein ligase binding Molecular Function
KEGG gene cross-reference
ath:AT1G34300
ath:AT2G19130
ath:AT4G00340
ath:AT4G32300
ath:AT5G35370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.860
Rank 1 · TkA05G464210 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA05G464210 · TK1151
Cytoplasm0.072
Rank 3 · TkA05G464210 · TK1151
Nucleus0.043
Rank 4 · TkA05G464210 · TK1151
Lysosome / Vacuole0.030
Rank 5 · TkA05G464210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08276PAN_29-29 aa
PF05445Pox_ser-thr_kin17-102 aa
PF01453B_lectin41-123 aa
PF14295PAN_4140-147 aa
PF08276PAN_2176-220 aa
PF00024PAN_1184-238 aa
PF14295PAN_4196-235 aa
PF07502MANEC205-235 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G464210PF08276PAN_29295e-0524.0
TkA05G464210PF05445Pox_ser-thr_kin171020.01914.7
TkA05G464210PF01453B_lectin411231e-1868.4
TkA05G464210PF14295PAN_41401470.008116.9
TkA05G464210PF08276PAN_21762205e-0524.0
TkA05G464210PF00024PAN_11842380.00218.7
TkA05G464210PF14295PAN_41962350.008116.9
TkA05G464210PF07502MANEC2052350.0215.8
TkA05G464210PF19770DUF62562712980.03814.8
TkA05G464210PF07714PK_Tyr_Ser-Thr3305967.7e-43147.4
TkA05G464210PF00069Pkinase3325942.8e-51175.2
TkA05G464210PF03109ABC13353637e-0626.1
TkA05G464210PF01636APH3764780.0713.6
TkA05G464210PF03109ABC13964887e-0626.1
TkA05G464210PF06734UL974134750.1312.2
TkA05G464210PF14531Kinase-like4215450.008816.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWZ5Arabidopsis thalianasp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-542.300%Swiss-ProtMedium
O64477Arabidopsis thalianasp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g1913039.600%Swiss-ProtMedium
Q9XID3Arabidopsis thalianasp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g3430038.800%Swiss-ProtMedium
Q9FLV4Arabidopsis thalianasp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g2408039.100%Swiss-ProtMedium
Q39203Arabidopsis thalianasp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-242.000%Swiss-ProtMedium

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