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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G460860
Reference: TK1151 Chr: Chr05 Coordinates: 115387753-115393724 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3675 bp · TkA05G460860|TK1151|cDNA

TTTTAAAGTGCTTCTCAACCCCTGAGTTTTTAAGTGACACCTAACGCAGCCTTCCCCCTCCGGATATATAATTTCATCTCTCCGCCACCCACCACCCACCACCACATCGGCCACCACCACCACCATCACCACCACCACCACCACCACGTCCGCCCATCACAGCCGCCATCTGACATATCTGATGAGAATCTGAATTTACAGAAGCATAAAGTGTGGATCTTTAATTGCTACAGGAACTGAAAAGACAAAATTCTTCAATC...

CDS

Download CDS FASTA

2817 bp · TkA05G460860|TK1151|CDS

ATGGATCGAAGGAGTTGGCCTTGGAAGAAGAAATCATCTGATAAAACAGTTGTATCAGAAACTGTTACTGTCTCTGCTTCAACTGGCTCTCAAAGTGACAAGGTGAAACAAGATAGCTACAAAAAGCCAAATTATGTCCAGATCTCTGTGGAGTCATATTCACATTTAACTGGACTGGAGGATCAAGTGAAGTCATATGAAGATCAAGTGAAATCGTATGAAGATCAAGTGAAATCATATGATGAACAAGTAAAAAGATA...

Protein

Download Protein FASTA

938 aa · TkA05G460860|TK1151|PROTEIN

MDRRSWPWKKKSSDKTVVSETVTVSASTGSQSDKVKQDSYKKPNYVQISVESYSHLTGLEDQVKSYEDQVKSYEDQVKSYDEQVKRYEDQQLVYEDQIKNLEDEVKDLNEQLSEAHSEMTTKENLVKQHTKVAEEAVSGWEKAEAEAATLKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQIIHDVVLAKTKQFDKMKHEFDTKIQNLDQELKRSASENASLSRSLQDRSNMLIKMTEEKSEKESEIEQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G460860
TK1151 IDTkA05G460860
OH-1004 IDLXL04_006804
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)29.200
Protein coverage (%)TK1151 45.736 / OH-1004 46.134
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G460860
LocationChr05:115387753-115393724 (-)
DescriptionSimilar to FPP7: Filament-like plant protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19835 Filament-like plant protein 4. No verified direct reference in this release
At1g47900 Filament-like plant protein 6. No verified direct reference in this release
At4g36120 Filament-like plant protein 5. No verified direct reference in this release
At2g23360 Filament-like plant protein 7. No verified direct reference in this release
At3g05270 Ensures, when in complex with COG2 and FPP2/VETH2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006804 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010090 trichome morphogenesis Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0008017 microtubule binding Molecular Function
KEGG gene cross-reference
ath:AT1G19835
ath:AT1G47900
ath:AT2G23360
ath:AT4G36120
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.547
Rank 1 · TkA05G460860 · TK1151
Cell membrane0.278
Rank 2 · TkA05G460860 · TK1151
Nucleus0.246
Rank 3 · TkA05G460860 · TK1151
Golgi apparatus0.086
Rank 4 · TkA05G460860 · TK1151
Endoplasmic reticulum0.057
Rank 5 · TkA05G460860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05911FPP10-119 aa
PF08614ATG1631-168 aa
PF28422CCDC8931-191 aa
PF07889DUF166446-91 aa
PF24161CCDC3951-208 aa
PF19220Rod_CreS53-129 aa
PF30677CCDC18_1st54-234 aa
PF25762HAUS157-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G460860PF05911FPP101194.9e-272905.9
TkA05G460860PF08614ATG16311680.01316.4
TkA05G460860PF28422CCDC89311910.5110.3
TkA05G460860PF07889DUF166446913.28.5
TkA05G460860PF24161CCDC39512081.8e-0936.8
TkA05G460860PF19220Rod_CreS531290.2511.2
TkA05G460860PF30677CCDC18_1st542343.27.7
TkA05G460860PF25762HAUS1571270.003218.0
TkA05G460860PF25994HH_AprE571240.006317.4
TkA05G460860PF28019HmpF581280.2610.4
TkA05G460860PF29384DUF853658825.28.2
TkA05G460860PF28016Mua591570.003618.2
TkA05G460860PF04871Uso1_p115_C591220.01616.2
TkA05G460860PF16378DUF498859840.05313.8
TkA05G460860PF30842LEKR1591540.5711.2
TkA05G460860PF00038Filament613420.0003521.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WSY2Arabidopsis thalianasp|Q0WSY2|FPP4_ARATH Filament-like plant protein 444.500%Swiss-ProtMedium
Q9C698Arabidopsis thalianasp|Q9C698|FPP6_ARATH Filament-like plant protein 642.000%Swiss-ProtMedium
O65649Arabidopsis thalianasp|O65649|FPP5_ARATH Filament-like plant protein 535.900%Swiss-ProtMedium
Q9SLN1Arabidopsis thalianasp|Q9SLN1|FPP7_ARATH Filament-like plant protein 737.100%Swiss-ProtLow
Q9MA92Arabidopsis thalianasp|Q9MA92|FPP3_ARATH Filament-like plant protein 338.100%Swiss-ProtLow

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