LXL04_006804 | RubberDandelionOmics

Gene overview

LXL04_006804

Reference: OH-1004 Chr: Chr02 Coordinates: 25900810-25904846 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2292 bp · LXL04_006804|LXL04_006804|OH1004|cDNA

ATGGAACACAAGTCATGGCTATGGAAGAAAAAGTCAATCGAGAAGACCATGTACGCAACCGACACACCCAACAGAGGGAATGAAGACGAGTTGCAGGGAATTCTAGCTTATGAAGCTGAACTCGAAAGAAACCTAAACATTTCAAACGAAAAGCTTTCATCCGCACTTGCAGAAATCAAAGCGAAAGACGACATCGCAAAGAAACAAACAAACATCGCACGTGAAGCCATTCAAGgaTGGGAGAAGGCGGAATCGGAGGT...

CDS

Download CDS FASTA

2292 bp · LXL04_006804|LXL04_006804|OH1004|CDS

ATGGAACACAAGTCATGGCTATGGAAGAAAAAGTCAATCGAGAAGACCATGTACGCAACCGACACACCCAACAGAGGGAATGAAGACGAGTTGCAGGGAATTCTAGCTTATGAAGCTGAACTCGAAAGAAACCTAAACATTTCAAACGAAAAGCTTTCATCCGCACTTGCAGAAATCAAAGCGAAAGACGACATCGCAAAGAAACAAACAAACATCGCACGTGAAGCCATTCAAGGATGGGAGAAGGCGGAATCGGAGGT...

Protein

Download Protein FASTA

763 aa · LXL04_006804|LXL04_006804|OH1004|PROTEIN

MEHKSWLWKKKSIEKTMYATDTPNRGNEDELQGILAYEAELERNLNISNEKLSSALAEIKAKDDIAKKQTNIAREAIQGWEKAESEVLSLKQELEKSTQQTISSEERLYGVDSALKECMQQLRFVREEQEKRIHDAVIKTSREYEKSLIAIEEKLSESNKKNSKLISENTHLTKSLLSKEKVIDELHAAMSRLHSELSSVTTRLESSQRDNASLSYEVRVMEKELEIRNEERDFNRRTADVAHKQHLASVKKIAHLETEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006804`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006804

Location Chr02:25900810-25904846 (+)

Description Similar to FPP7: Filament-like plant protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g23360`	Filament-like plant protein 7.	No verified direct reference in this release
`At1g19835`	Filament-like plant protein 4.	No verified direct reference in this release
`At1g47900`	Filament-like plant protein 6.	No verified direct reference in this release
`At4g36120`	Filament-like plant protein 5.	No verified direct reference in this release
`At3g05270`	Ensures, when in complex with COG2 and FPP2/VETH2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006804 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010090 trichome morphogenesis Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G19835

ath:AT1G47900

ath:AT2G23360

ath:AT4G36120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.486

Rank 1 · LXL04_006804 · OH-1004

Nucleus0.282

Rank 2 · LXL04_006804 · OH-1004

Cell membrane0.279

Rank 3 · LXL04_006804 · OH-1004

Endoplasmic reticulum0.059

Rank 4 · LXL04_006804 · OH-1004

Plastid0.056

Rank 5 · LXL04_006804 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05911.17FPP62-344 aa

PF05911.17FPP340-389 aa

PF05911.17FPP384-492 aa

PF05911.17FPP489-655 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006804	`PF05911.17`	FPP	62	344	4.9e-149	498.9
LXL04_006804	`PF05911.17`	FPP	340	389	4.9e-149	498.9
LXL04_006804	`PF05911.17`	FPP	384	492	4.9e-149	498.9
LXL04_006804	`PF05911.17`	FPP	489	655	4.9e-149	498.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SLN1`	Arabidopsis thaliana	Filament-like plant protein 7	42.534%	Swiss-Prot	weak database homology
`Q0WSY2`	Arabidopsis thaliana	Filament-like plant protein 4	36.267%	Swiss-Prot	weak database homology
`Q9C698`	Arabidopsis thaliana	Filament-like plant protein 6	36.991%	Swiss-Prot	weak database homology
`O65649`	Arabidopsis thaliana	Filament-like plant protein 5	32.494%	Swiss-Prot	weak database homology
`Q9MA92`	Arabidopsis thaliana	Filament-like plant protein 3	31.017%	Swiss-Prot	weak database homology

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