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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G455970
Reference: TK1151 Chr: Chr05 Coordinates: 114217130-114219664 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1675 bp · TkA05G455970|TK1151|cDNA

ATCCAGCCCATCTTCTACTCAGATGATTTGTACTCTCAAAGGGAGATAAACCCTGATTCCAATCCCAGCAGGGCTTATCATCAACAAAAATGCAAGCAGCTGCCACTAGATTCTTCTCTCTGTTCGAAAGCAACGCCACCTCCACCGCCACCACAGCCGCAAACCTGTACCCGTTCCGTGCAATTCGATTACAACCGACACTCTTCTGTTCTCCAACCCTACGATTCCGTCGCTACTCGTCTTCCTCCGCTGCCGTGATA...

CDS

Download CDS FASTA

1290 bp · TkA05G455970|TK1151|CDS

ATGCAAGCAGCTGCCACTAGATTCTTCTCTCTGTTCGAAAGCAACGCCACCTCCACCGCCACCACAGCCGCAAACCTGTACCCGTTCCGTGCAATTCGATTACAACCGACACTCTTCTGTTCTCCAACCCTACGATTCCGTCGCTACTCGTCTTCCTCCGCTGCCGTGATAGAAAATGATTCTCCCACCACCGCCACCCTTGGTGAAACAACGGAAGCCTCCCACCAACATCCATGGCCGGAGTGGGTGACTTTCGTTGA...

Protein

Download Protein FASTA

429 aa · TkA05G455970|TK1151|PROTEIN

MQAAATRFFSLFESNATSTATTAANLYPFRAIRLQPTLFCSPTLRFRRYSSSSAAVIENDSPTTATLGETTEASHQHPWPEWVTFVDRLKTKGYLNKEGGNDVAVYKDMTILKEACLSFGRDRFDIFKSLSMQDIQTLVDKGCPNINRKTVNSGKRLRAHLQLVEGDVCGVCILRGSCDRAFVILKDIESGARTVDIVRILLNYALDPVTVSNSKPSGAEIVEKSAKKLLLELTELSETAIDPELQKPPATIPKKVQSFE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G455970
TK1151 IDTkA05G455970
OH-1004 IDLXL04_022280
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G455970
LocationChr05:114217130-114219664 (-)
DescriptionSimilar to VAR3: Zinc finger protein VAR3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022280 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0001975 response to amphetamine Biological Process
GO:0002224 toll-like receptor signaling pathway Biological Process
GO:0002753 cytoplasmic pattern recognition receptor signaling pathway Biological Process
GO:0006111 regulation of gluconeogenesis Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006457 protein folding Biological Process
GO:0006607 NLS-bearing protein import into nucleus Biological Process
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0016925 protein sumoylation Biological Process
GO:0045824 negative regulation of innate immune response Biological Process
KEGG gene cross-reference
ath:AT5G17790
mmu:19386
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.618
Rank 1 · TkA05G455970 · TK1151
Mitochondrion0.243
Rank 2 · TkA05G455970 · TK1151
Nucleus0.160
Rank 3 · TkA05G455970 · TK1151
Cytoplasm0.081
Rank 4 · TkA05G455970 · TK1151
Cell membrane0.027
Rank 5 · TkA05G455970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10497zf-4CXXC_R138-56 aa
PF10497zf-4CXXC_R1142-174 aa
PF25164CoiA_N270-283 aa
PF10497zf-4CXXC_R1271-295 aa
PF02891zf-MIZ273-283 aa
PF00641Zn_ribbon_RanBP274-296 aa
PF00301Rubredoxin276-283 aa
PF20864Zn_ribbon_TEX13277-296 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G455970PF10497zf-4CXXC_R138561.310.0
TkA05G455970PF10497zf-4CXXC_R11421741.310.0
TkA05G455970PF25164CoiA_N2702830.2911.4
TkA05G455970PF10497zf-4CXXC_R12712951.310.0
TkA05G455970PF02891zf-MIZ2732830.06313.8
TkA05G455970PF00641Zn_ribbon_RanBP2742966e-2380.5
TkA05G455970PF00301Rubredoxin2762830.08313.6
TkA05G455970PF20864Zn_ribbon_TEX132772961.1e-0629.0
TkA05G455970PF12773DZR2793350.008217.0
TkA05G455970PF10497zf-4CXXC_R12913261.310.0
TkA05G455970PF25164CoiA_N3103220.2911.4
TkA05G455970PF02891zf-MIZ3113220.06313.8
TkA05G455970PF00641Zn_ribbon_RanBP3123406e-2380.5
TkA05G455970PF00301Rubredoxin3153220.08313.6
TkA05G455970PF20864Zn_ribbon_TEX133163351.1e-0629.0
TkA05G455970PF12773DZR3183740.008217.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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